Variant report

Variant	rs873832
Chromosome Location	chr1:224781256-224781257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55730825	1.00[AMR][1000 genomes]
rs56034385	1.00[AMR][1000 genomes]
rs56331910	0.82[AFR][1000 genomes]
rs56803202	0.82[AFR][1000 genomes]
rs56825738	1.00[AMR][1000 genomes]
rs56912045	1.00[AMR][1000 genomes]
rs57321094	1.00[AMR][1000 genomes]
rs57845819	1.00[AMR][1000 genomes]
rs57931386	1.00[AMR][1000 genomes]
rs58482551	1.00[AMR][1000 genomes]
rs58565730	1.00[AMR][1000 genomes]
rs59931444	1.00[AMR][1000 genomes]
rs60418054	1.00[AMR][1000 genomes]
rs60681998	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60737124	1.00[AMR][1000 genomes]
rs61556319	1.00[AMR][1000 genomes]
rs6680134	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs74146204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146215	0.82[AFR][1000 genomes]
rs74146216	0.80[AFR][1000 genomes]
rs74146220	0.82[AFR][1000 genomes]
rs74146393	1.00[AMR][1000 genomes]
rs74146397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146399	1.00[AMR][1000 genomes]
rs74146400	1.00[AMR][1000 genomes]
rs74149624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149626	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs873829	1.00[AMR][1000 genomes]
rs873830	1.00[AMR][1000 genomes]
rs873831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv873224	chr1:224746577-224794913	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224777200-224782200	Weak transcription	Aorta	Aorta
2	chr1:224777400-224782000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:224777400-224782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:224777400-224782200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:224777600-224782200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:224779600-224781600	Enhancers	HMEC	breast
7	chr1:224779800-224781600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:224780000-224781800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:224780200-224781400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:224780200-224781400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:224780200-224781600	Enhancers	HSMMtube	muscle
12	chr1:224780200-224782000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:224780400-224781400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:224780600-224782200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:224781200-224782000	Weak transcription	Lung	lung
16	chr1:224781200-224782200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:224781200-224782200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:224781200-224782400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:224781200-224793800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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