Variant report
Variant | rs58565730 |
---|---|
Chromosome Location | chr1:224787118-224787119 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10799588 | 0.82[ASN][1000 genomes] |
rs11802812 | 0.93[ASN][1000 genomes] |
rs1566388 | 0.85[ASN][1000 genomes] |
rs55730825 | 1.00[AMR][1000 genomes] |
rs56034385 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56825738 | 1.00[AMR][1000 genomes] |
rs56912045 | 1.00[AMR][1000 genomes] |
rs57209437 | 1.00[ASN][1000 genomes] |
rs57321094 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57845819 | 1.00[AMR][1000 genomes] |
rs57931386 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58482551 | 1.00[AMR][1000 genomes] |
rs59018094 | 0.86[ASN][1000 genomes] |
rs59610983 | 1.00[ASN][1000 genomes] |
rs59643307 | 1.00[ASN][1000 genomes] |
rs59931444 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60418054 | 1.00[AMR][1000 genomes] |
rs60681998 | 1.00[AMR][1000 genomes] |
rs60737124 | 1.00[AMR][1000 genomes] |
rs61247305 | 0.93[ASN][1000 genomes] |
rs61556319 | 1.00[AMR][1000 genomes] |
rs6657458 | 1.00[ASN][1000 genomes] |
rs6693360 | 0.93[ASN][1000 genomes] |
rs74146204 | 1.00[AMR][1000 genomes] |
rs74146393 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74146395 | 0.94[AFR][1000 genomes] |
rs74146397 | 1.00[AMR][1000 genomes] |
rs74146399 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74146400 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74149624 | 1.00[AMR][1000 genomes] |
rs74149626 | 1.00[AMR][1000 genomes] |
rs7529774 | 0.85[ASN][1000 genomes] |
rs7532595 | 0.85[ASN][1000 genomes] |
rs7534595 | 0.93[ASN][1000 genomes] |
rs7539939 | 0.93[ASN][1000 genomes] |
rs7550112 | 0.93[ASN][1000 genomes] |
rs873829 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs873830 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs873831 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs873832 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014717 | chr1:224551939-224885543 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
2 | nsv535311 | chr1:224551939-224885543 | Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
3 | nsv873224 | chr1:224746577-224794913 | Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:224781200-224793800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr1:224781600-224787200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |