Variant report

Variant	rs61247305
Chromosome Location	chr1:224802477-224802478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10799588	0.88[ASN][1000 genomes]
rs11802812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11803050	1.00[AMR][1000 genomes]
rs11804994	1.00[AMR][1000 genomes]
rs57209437	0.93[ASN][1000 genomes]
rs58565730	0.93[ASN][1000 genomes]
rs59018094	0.80[ASN][1000 genomes]
rs59610983	0.93[ASN][1000 genomes]
rs59643307	0.93[ASN][1000 genomes]
rs6657458	0.93[ASN][1000 genomes]
rs6693360	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7534595	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7539939	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7550112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224797400-224802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:224797600-224802800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:224797600-224803200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:224797600-224803400	Weak transcription	Psoas Muscle	Psoas
5	chr1:224799600-224803000	Weak transcription	NHDF-Ad	bronchial
6	chr1:224800800-224802800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:224801000-224803200	Weak transcription	Pancreas	Pancrea
8	chr1:224802000-224803200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links