Variant report

Variant	rs59018094
Chromosome Location	chr1:224756852-224756853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11802812	0.80[ASN][1000 genomes]
rs57209437	0.86[ASN][1000 genomes]
rs58565730	0.86[ASN][1000 genomes]
rs59610983	0.86[ASN][1000 genomes]
rs59643307	0.86[ASN][1000 genomes]
rs61247305	0.80[ASN][1000 genomes]
rs6657458	0.86[ASN][1000 genomes]
rs6693360	0.80[ASN][1000 genomes]
rs7534595	0.80[ASN][1000 genomes]
rs7539939	0.80[ASN][1000 genomes]
rs7550112	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv873224	chr1:224746577-224794913	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224740000-224762200	Weak transcription	Ovary	ovary
2	chr1:224753600-224780400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:224753800-224758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:224753800-224759400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:224754000-224762000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:224754000-224767000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:224754000-224767200	Weak transcription	NHDF-Ad	bronchial
8	chr1:224755600-224759400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:224756200-224758000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:224756600-224757400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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