Variant report

Variant	rs7532595
Chromosome Location	chr1:224794237-224794238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10799588	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10799589	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10916653	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11802812	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12564263	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1353837	0.81[EUR][1000 genomes]
rs1499292	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1566386	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1566387	1.00[CEU][hapmap]
rs1566388	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849654	0.89[JPT][hapmap]
rs1932991	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2405315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2405317	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4654057	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4654058	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4654060	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57209437	0.85[ASN][1000 genomes]
rs58565730	0.85[ASN][1000 genomes]
rs59610983	0.85[ASN][1000 genomes]
rs59643307	0.85[ASN][1000 genomes]
rs6657458	0.85[ASN][1000 genomes]
rs6658957	0.82[EUR][1000 genomes]
rs6665204	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6690184	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs6693360	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6697510	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7516323	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7529774	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539939	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7550112	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs883115	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs904505	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs969026	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv873224	chr1:224746577-224794913	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224791200-224794400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:224793600-224794600	ZNF genes & repeats	Aorta	Aorta
3	chr1:224794000-224794600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:224794000-224796000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:224794000-224796200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:224794200-224794400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:224794200-224794400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links