Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR26-1	chr1:224795999-224799294	XLOC_001228
2	lnc-WDR26-1	chr1:224795999-224799294	XLOC_001228

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10799588	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10799589	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10916653	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12564263	0.81[EUR][1000 genomes]
rs1353837	0.80[EUR][1000 genomes]
rs1499292	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1566386	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1566388	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1932991	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2405315	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4654057	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4654058	0.83[EUR][1000 genomes]
rs4654060	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6658957	0.82[EUR][1000 genomes]
rs6665204	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6690184	0.82[EUR][1000 genomes]
rs6697510	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7516323	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7529774	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7532595	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs883115	0.83[EUR][1000 genomes]
rs904505	0.83[EUR][1000 genomes]
rs969026	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224794000-224796200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:224794400-224796200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:224794400-224796200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:224794400-224796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:224794400-224796600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:224794400-224797000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:224794600-224796600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:224795400-224797600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:224795800-224802000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:224796000-224796200	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:224796000-224796800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: