Variant report

Variant	rs6690184
Chromosome Location	chr1:224813400-224813401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10916653	0.80[EUR][1000 genomes]
rs12564263	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1353837	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1566386	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1566387	0.85[CEU][hapmap]
rs1566388	0.83[EUR][1000 genomes]
rs2405317	0.82[EUR][1000 genomes]
rs4654057	0.83[EUR][1000 genomes]
rs4654058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4654060	0.81[EUR][1000 genomes]
rs6658957	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665204	0.84[EUR][1000 genomes]
rs6697510	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs6699331	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7516323	0.80[EUR][1000 genomes]
rs7529774	0.83[EUR][1000 genomes]
rs7532595	0.82[EUR][1000 genomes]
rs883115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs904505	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224806600-224813600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:224809400-224815800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:224810400-224813600	Enhancers	Pancreas	Pancrea
4	chr1:224810400-224814600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:224810400-224819800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:224810600-224813600	Enhancers	Fetal Thymus	thymus
7	chr1:224810600-224814600	Enhancers	HSMM	muscle
8	chr1:224810600-224814800	Enhancers	Fetal Brain Male	brain
9	chr1:224810600-224814800	Enhancers	Osteobl	bone
10	chr1:224810800-224815600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:224811000-224819800	Weak transcription	Right Atrium	heart
12	chr1:224812000-224814600	Genic enhancers	NHDF-Ad	bronchial
13	chr1:224812000-224814800	Genic enhancers	NHLF	lung
14	chr1:224812200-224813400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:224812200-224813400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:224812200-224813600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:224812200-224814600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:224812200-224815200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:224812400-224813400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:224812400-224813600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:224812400-224813800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:224812400-224814600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:224812600-224819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:224812800-224813800	Enhancers	NH-A	brain
25	chr1:224812800-224815600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:224812800-224825200	Weak transcription	HMEC	breast
27	chr1:224812800-224828200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:224813000-224813400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:224813000-224820200	Weak transcription	Dnd41	blood
30	chr1:224813200-224814600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:224813400-224813600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:224813400-224814400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:224813400-224814600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:224813400-224816400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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