Variant report

Variant	rs1566388
Chromosome Location	chr1:224795474-224795475
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR26-1	chr1:224795461-224795579	ucscGeneNc_uc001hqe_1

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10799588	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10799589	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10916653	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11802812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12564263	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1353837	0.81[EUR][1000 genomes]
rs1499292	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1566386	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1566387	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs16849654	1.00[JPT][hapmap]
rs1932991	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2405315	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2405317	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4654057	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4654058	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4654060	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57209437	0.85[ASN][1000 genomes]
rs58565730	0.85[ASN][1000 genomes]
rs59610983	0.85[ASN][1000 genomes]
rs59643307	0.85[ASN][1000 genomes]
rs6657458	0.85[ASN][1000 genomes]
rs6658957	0.83[EUR][1000 genomes]
rs6665204	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6690184	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs6693360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6697510	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7516323	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7529774	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532595	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7550112	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs883115	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs904505	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs969026	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224794000-224796000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:224794000-224796200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:224794400-224795800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:224794400-224795800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:224794400-224796000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:224794400-224796200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:224794400-224796200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:224794400-224796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:224794400-224796600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:224794400-224797000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:224794600-224796000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr1:224794600-224796600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:224795200-224795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:224795400-224795800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:224795400-224797600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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