Variant report
| Variant | rs873867 |
|---|---|
| Chromosome Location | chr6:55236937-55236938 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1032772 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs10948902 | 0.87[CEU][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap] |
| rs12193282 | 0.87[CEU][hapmap] |
| rs12209649 | 0.83[AMR][1000 genomes] |
| rs12662782 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap] |
| rs12663965 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap] |
| rs1502196 | 1.00[CHB][hapmap] |
| rs16886642 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16886667 | 1.00[JPT][hapmap] |
| rs16886670 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs16886684 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16886688 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs17830060 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1948779 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs1948781 | 0.85[JPT][hapmap] |
| rs1965363 | 0.84[CHB][hapmap] |
| rs3843527 | 1.00[JPT][hapmap] |
| rs3846915 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs3846916 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs3846917 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
| rs41271314 | 0.86[EUR][1000 genomes] |
| rs56849733 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6900253 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6915910 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6938678 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6938704 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs73744269 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs73744288 | 0.81[EUR][1000 genomes] |
| rs9464228 | 0.87[CEU][hapmap];0.88[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885903 | chr6:55142337-55344782 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034960 | chr6:55152655-55243149 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv885904 | chr6:55156812-55344782 | Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034037 | chr6:55222409-56069600 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 5 | esv3400100 | chr6:55228042-55250271 | Weak transcription Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv470819 | chr6:55236937-55368815 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
