Variant report

Variant	rs874583
Chromosome Location	chr1:226536645-226536646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10915985	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226521400-226541000	Weak transcription	Right Atrium	heart
2	chr1:226529800-226537400	Weak transcription	K562	blood
3	chr1:226533800-226543600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:226534800-226537000	Weak transcription	Fetal Kidney	kidney
5	chr1:226535400-226536800	Weak transcription	Lung	lung
6	chr1:226535600-226537600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:226535800-226537800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:226535800-226537800	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:226535800-226540200	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:226536400-226537400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:226536400-226538000	Enhancers	GM12878-XiMat	blood
12	chr1:226536400-226541200	Enhancers	Fetal Intestine Large	intestine
13	chr1:226536600-226536800	Enhancers	Small Intestine	intestine
14	chr1:226536600-226537000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:226536600-226537000	Enhancers	HepG2	liver
16	chr1:226536600-226537800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:226536600-226538000	Enhancers	Fetal Intestine Small	intestine
18	chr1:226536600-226538800	Enhancers	Primary B cells from peripheral blood	blood
19	chr1:226536600-226538800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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