Variant report

Variant	rs10915985
Chromosome Location	chr1:226539750-226539751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226538831..226541186-chr1:226544842..226547833,2	MCF-7	breast:
2	chr1:226539620..226541774-chr1:226551874..226554796,2	K562	blood:
3	chr1:226495275..226498399-chr1:226537836..226540808,3	K562	blood:
4	chr1:226310111..226312814-chr1:226537191..226539857,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143799	Chromatin interaction
ENSG00000183814	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11801168	0.86[CHB][hapmap]
rs12567614	0.86[CHB][hapmap];0.89[CHD][hapmap]
rs6677172	0.86[CHB][hapmap]
rs874583	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226521400-226541000	Weak transcription	Right Atrium	heart
2	chr1:226533800-226543600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:226535800-226540200	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:226536400-226541200	Enhancers	Fetal Intestine Large	intestine
5	chr1:226537000-226542800	Weak transcription	Lung	lung
6	chr1:226537000-226543400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:226537000-226549200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:226537200-226541800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:226537800-226543600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr1:226538000-226540800	Weak transcription	Left Ventricle	heart
11	chr1:226538000-226541600	Weak transcription	Spleen	Spleen
12	chr1:226538000-226543000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:226538000-226543000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:226538000-226543200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:226538000-226546200	Weak transcription	HMEC	breast
16	chr1:226538000-226547800	Weak transcription	Colonic Mucosa	Colon
17	chr1:226538200-226540400	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:226538200-226541000	Weak transcription	Brain Angular Gyrus	brain
19	chr1:226538200-226541000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr1:226538200-226541400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:226538200-226543000	Weak transcription	Brain Anterior Caudate	brain
22	chr1:226538200-226543400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:226538200-226543400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:226538200-226544800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:226538200-226545000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr1:226538200-226545400	Weak transcription	Fetal Lung	lung
27	chr1:226538200-226545800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:226538200-226545800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:226538200-226546600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:226538200-226547800	Weak transcription	HUVEC	blood vessel
31	chr1:226538400-226540600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:226538400-226540600	Weak transcription	Placenta	Placenta
33	chr1:226538400-226540600	Weak transcription	Fetal Stomach	stomach
34	chr1:226538400-226542200	Weak transcription	Fetal Brain Male	brain
35	chr1:226538400-226543200	Weak transcription	Fetal Brain Female	brain
36	chr1:226538400-226544200	Weak transcription	Primary B cells from cord blood	blood
37	chr1:226538400-226544200	Weak transcription	Brain Germinal Matrix	brain
38	chr1:226538400-226545400	Weak transcription	Fetal Kidney	kidney
39	chr1:226538400-226546000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:226538400-226546600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:226538400-226546600	Weak transcription	NH-A	brain
42	chr1:226538400-226566800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:226538600-226539800	Weak transcription	Fetal Heart	heart
44	chr1:226538600-226540600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr1:226538600-226540600	Weak transcription	Fetal Muscle Leg	muscle
46	chr1:226538600-226540800	Weak transcription	Right Ventricle	heart
47	chr1:226538600-226541000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:226538600-226541200	Enhancers	Fetal Intestine Small	intestine
49	chr1:226538600-226541400	Weak transcription	K562	blood
50	chr1:226538600-226542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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