The 2.0 version of rSNPBase

Variant report

Variant rs6677172
Chromosome Location chr1:226542114-226542115
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:226533800-226543600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:226537000-226542800 Weak transcription Lung lung
3 chr1:226537000-226543400 Weak transcription H1 Cell Line embryonic stem cell
4 chr1:226537000-226549200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:226537800-226543600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:226538000-226543000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:226538000-226543000 Weak transcription Monocytes-CD14+_RO01746 blood
8 chr1:226538000-226543200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:226538000-226546200 Weak transcription HMEC breast
10 chr1:226538000-226547800 Weak transcription Colonic Mucosa Colon
11 chr1:226538200-226543000 Weak transcription Brain Anterior Caudate brain
12 chr1:226538200-226543400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:226538200-226543400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:226538200-226544800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:226538200-226545000 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:226538200-226545400 Weak transcription Fetal Lung lung
17 chr1:226538200-226545800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:226538200-226545800 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr1:226538200-226546600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:226538200-226547800 Weak transcription HUVEC blood vessel
21 chr1:226538400-226542200 Weak transcription Fetal Brain Male brain
22 chr1:226538400-226543200 Weak transcription Fetal Brain Female brain
23 chr1:226538400-226544200 Weak transcription Primary B cells from cord blood blood
24 chr1:226538400-226544200 Weak transcription Brain Germinal Matrix brain
25 chr1:226538400-226545400 Weak transcription Fetal Kidney kidney
26 chr1:226538400-226546000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:226538400-226546600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:226538400-226546600 Weak transcription NH-A brain
29 chr1:226538400-226566800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr1:226538600-226542400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:226538600-226543000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:226538600-226543000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:226538600-226543000 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:226538600-226543200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:226538600-226543200 Weak transcription Duodenum Mucosa Duodenum
36 chr1:226538600-226543200 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:226538600-226543200 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr1:226538600-226543400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:226538600-226543400 Weak transcription Brain Cingulate Gyrus brain
40 chr1:226538600-226543400 Weak transcription Ovary ovary
41 chr1:226538600-226543600 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:226538600-226543600 Weak transcription Brain Hippocampus Middle brain
43 chr1:226538600-226545000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:226538600-226545400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:226538600-226545600 Weak transcription Primary T cells fromperipheralblood blood
46 chr1:226538600-226545600 Weak transcription Fetal Thymus thymus
47 chr1:226538600-226545800 Weak transcription Pancreas Pancrea
48 chr1:226538600-226546000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:226538600-226547400 Weak transcription HepG2 liver
50 chr1:226538600-226547600 Weak transcription Gastric stomach

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Last update: Aug 31, 2015