Variant report

Variant	rs878366
Chromosome Location	chr1:226537868-226537869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:226495275..226498399-chr1:226537836..226540808,3	K562	blood:
2	chr1:226310111..226312814-chr1:226537191..226539857,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183814	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10915986	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11801168	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12567614	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6677172	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226521400-226541000	Weak transcription	Right Atrium	heart
2	chr1:226533800-226543600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:226535800-226540200	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:226536400-226538000	Enhancers	GM12878-XiMat	blood
5	chr1:226536400-226541200	Enhancers	Fetal Intestine Large	intestine
6	chr1:226536600-226538000	Enhancers	Fetal Intestine Small	intestine
7	chr1:226536600-226538800	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:226536600-226538800	Enhancers	Stomach Mucosa	stomach
9	chr1:226536800-226538000	Enhancers	Colonic Mucosa	Colon
10	chr1:226536800-226538400	Enhancers	Fetal Stomach	stomach
11	chr1:226536800-226538600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:226536800-226538600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:226536800-226538600	Enhancers	Fetal Muscle Trunk	muscle
14	chr1:226536800-226538600	Enhancers	Ovary	ovary
15	chr1:226537000-226538200	Weak transcription	Small Intestine	intestine
16	chr1:226537000-226538400	Enhancers	Placenta	Placenta
17	chr1:226537000-226538600	Enhancers	Fetal Muscle Leg	muscle
18	chr1:226537000-226542800	Weak transcription	Lung	lung
19	chr1:226537000-226543400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:226537000-226549200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:226537200-226538400	Enhancers	Primary B cells from cord blood	blood
22	chr1:226537200-226541800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:226537400-226538200	Enhancers	Fetal Lung	lung
24	chr1:226537400-226538600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:226537600-226538000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:226537600-226538000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:226537600-226538000	Enhancers	Left Ventricle	heart
28	chr1:226537600-226538000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr1:226537600-226538000	Enhancers	Spleen	Spleen
30	chr1:226537600-226538000	Flanking Active TSS	HepG2	liver
31	chr1:226537600-226538000	Enhancers	HMEC	breast
32	chr1:226537600-226538200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:226537600-226538200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:226537600-226538200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr1:226537600-226538200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:226537600-226538200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:226537600-226538200	Enhancers	Brain Angular Gyrus	brain
38	chr1:226537600-226538200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:226537600-226538400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:226537600-226538400	Enhancers	Brain Germinal Matrix	brain
41	chr1:226537600-226538400	Enhancers	Fetal Brain Male	brain
42	chr1:226537600-226538400	Enhancers	Fetal Brain Female	brain
43	chr1:226537600-226538400	Enhancers	Fetal Kidney	kidney
44	chr1:226537600-226538400	Flanking Active TSS	K562	blood
45	chr1:226537600-226538600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:226537600-226538600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:226537600-226538600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:226537600-226538600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:226537600-226538600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr1:226537600-226538600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links