Variant report

Variant	rs875705
Chromosome Location	chr5:166988890-166988891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10035753	1.00[TSI][hapmap]
rs17068781	1.00[JPT][hapmap]
rs17068796	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2337019	1.00[JPT][hapmap]
rs278015	1.00[JPT][hapmap]
rs58310152	0.96[ASN][1000 genomes]
rs73380909	0.80[ASN][1000 genomes]
rs977141	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166977800-166989000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:166987000-166989200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:166987200-166991200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:166987400-166989400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:166987800-166989200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:166988000-166989200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:166988000-166989200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:166988000-166989600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:166988400-166989200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:166988400-166989200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:166988600-166989000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:166988600-166989200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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