Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10516033	0.81[YRI][hapmap]
rs12655922	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs17068781	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17068792	0.89[CHB][hapmap];0.96[ASN][1000 genomes]
rs17068862	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];0.92[ASN][1000 genomes]
rs2337019	1.00[JPT][hapmap]
rs278011	1.00[ASN][1000 genomes]
rs278015	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59355279	0.90[ASN][1000 genomes]
rs59726875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60290329	0.92[ASN][1000 genomes]
rs61216313	0.90[ASN][1000 genomes]
rs6859433	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73380909	0.94[ASN][1000 genomes]
rs73380910	0.98[ASN][1000 genomes]
rs73380913	0.98[ASN][1000 genomes]
rs73380917	0.92[ASN][1000 genomes]
rs73381002	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73803911	0.90[ASN][1000 genomes]
rs875705	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs977141	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167010800-167020400	Weak transcription	HSMM	muscle
2	chr5:167010800-167022200	Weak transcription	Fetal Lung	lung
3	chr5:167015200-167019200	Weak transcription	Brain Substantia Nigra	brain
4	chr5:167015200-167027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:167015400-167019200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167015600-167020800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:167018800-167019000	Enhancers	A549	lung
8	chr5:167018800-167021000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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