Variant report

Variant	rs73803911
Chromosome Location	chr5:167050320-167050321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12655922	0.90[ASN][1000 genomes]
rs17068781	0.90[ASN][1000 genomes]
rs17068792	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17068796	0.90[ASN][1000 genomes]
rs17068862	0.98[ASN][1000 genomes]
rs278011	0.90[ASN][1000 genomes]
rs278015	0.90[ASN][1000 genomes]
rs59355279	1.00[ASN][1000 genomes]
rs59726875	0.84[ASN][1000 genomes]
rs60290329	0.98[ASN][1000 genomes]
rs61216313	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6859433	0.96[ASN][1000 genomes]
rs73380909	0.88[ASN][1000 genomes]
rs73380910	0.92[ASN][1000 genomes]
rs73380913	0.92[ASN][1000 genomes]
rs73380917	0.83[ASN][1000 genomes]
rs73381002	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167042200-167053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167047800-167059600	Weak transcription	HSMM	muscle
3	chr5:167048800-167053600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167049600-167050600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167049800-167050600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:167049800-167050600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167050000-167050400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167050000-167050400	Enhancers	Fetal Lung	lung
9	chr5:167050000-167050600	Active TSS	Osteobl	bone
10	chr5:167050000-167050800	Enhancers	NHEK	skin
11	chr5:167050200-167050400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:167050200-167050600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167050200-167050800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:167050200-167056400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links