Variant report

Variant	rs60290329
Chromosome Location	chr5:167029077-167029078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12655922	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17068781	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17068792	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17068796	0.92[ASN][1000 genomes]
rs17068862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278011	0.92[ASN][1000 genomes]
rs278015	0.92[ASN][1000 genomes]
rs59355279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59726875	0.86[ASN][1000 genomes]
rs61216313	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6859433	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73380909	0.90[ASN][1000 genomes]
rs73380910	0.94[ASN][1000 genomes]
rs73380913	0.94[ASN][1000 genomes]
rs73380917	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73381002	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73803911	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167019400-167036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167023200-167029800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:167023400-167034000	Weak transcription	Fetal Lung	lung
4	chr5:167023400-167048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:167025000-167029200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:167027400-167029600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:167027600-167029200	Enhancers	Fetal Brain Female	brain
8	chr5:167028000-167029200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:167028400-167029400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:167028800-167029400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:167028800-167029400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:167028800-167029400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:167028800-167029400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:167028800-167029600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:167029000-167029400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:167029000-167029400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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