Variant report

Variant	rs59355279
Chromosome Location	chr5:167054710-167054711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12655922	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17068781	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17068792	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17068796	0.90[ASN][1000 genomes]
rs17068862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs278011	0.90[ASN][1000 genomes]
rs278015	0.90[ASN][1000 genomes]
rs59726875	0.84[ASN][1000 genomes]
rs60290329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61216313	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6859433	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73380909	0.88[ASN][1000 genomes]
rs73380910	0.92[ASN][1000 genomes]
rs73380913	0.92[ASN][1000 genomes]
rs73380917	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73381002	0.86[ASN][1000 genomes]
rs73803911	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167047800-167059600	Weak transcription	HSMM	muscle
2	chr5:167050200-167056400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167050600-167056400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:167052200-167055600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167053400-167054800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:167053600-167058400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:167053800-167058400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:167054000-167058400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:167054200-167055400	Weak transcription	NHEK	skin
10	chr5:167054400-167057800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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