Variant report

Variant	rs875713
Chromosome Location	chr4:130995400-130995401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10018160	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021193	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10026669	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10026751	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099032	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11099034	0.86[AMR][1000 genomes]
rs11099037	0.86[AMR][1000 genomes]
rs11933661	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12501049	0.87[AMR][1000 genomes]
rs12501100	0.87[AMR][1000 genomes]
rs12502233	0.86[AMR][1000 genomes]
rs12505406	0.85[AMR][1000 genomes]
rs12508682	0.87[AMR][1000 genomes]
rs13114373	0.87[AMR][1000 genomes]
rs13118527	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13127316	0.84[AMR][1000 genomes]
rs13136872	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150371	0.84[AMR][1000 genomes]
rs13152596	0.87[AMR][1000 genomes]
rs1395974	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395975	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395977	0.87[AMR][1000 genomes]
rs1828077	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2131501	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391581	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28758340	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4863960	0.86[AMR][1000 genomes]
rs4864333	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4864335	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4864336	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4864351	0.85[AMR][1000 genomes]
rs4864352	0.86[AMR][1000 genomes]
rs4864353	0.86[AMR][1000 genomes]
rs6844823	0.81[AMR][1000 genomes]
rs7655772	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7668591	0.86[AMR][1000 genomes]
rs875714	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906465	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9985771	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595412	chr4:130962263-131001046	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv461640	chr4:130962263-131003605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595413	chr4:130962263-131003605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1027281	chr4:130962945-131005768	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1027051	chr4:130962945-131010834	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1019114	chr4:130962945-131013140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1027197	chr4:130965914-130998219	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028045	chr4:130965914-131004697	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv595414	chr4:130983055-131024471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv595415	chr4:130983605-131046911	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130989600-130995400	Weak transcription	Stomach Mucosa	stomach
2	chr4:130990000-130996800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:130992200-130995800	Enhancers	Fetal Intestine Large	intestine
4	chr4:130992800-130996000	Enhancers	Duodenum Mucosa	Duodenum
5	chr4:130993800-130995400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:130994400-130995400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:130994600-130995600	Flanking Active TSS	Liver	Liver
8	chr4:130995200-130995600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:130995200-130995600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:130995200-130995600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:130995200-130995600	Enhancers	Gastric	stomach
12	chr4:130995200-130995600	Enhancers	Pancreas	Pancrea
13	chr4:130995200-130996000	Enhancers	Fetal Intestine Small	intestine
14	chr4:130995200-130998000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:130995400-130995600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:130995400-130995600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:130995400-130996000	Enhancers	Stomach Mucosa	stomach
18	chr4:130995400-130999400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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