Variant report

Variant	rs10021193
Chromosome Location	chr4:130959880-130959881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10018160	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10026669	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10026751	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13136872	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1395974	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1395975	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2131501	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2391581	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs875713	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs875714	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs906465	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879936	chr4:130941492-130981535	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130952600-130965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:130954600-130960600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:130954800-130966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:130954800-130966200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:130954800-130966600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:130959800-130966600	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links