Variant report

Variant	rs875822
Chromosome Location	chr1:165286563-165286564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12737755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1506949	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34913941	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35055340	0.88[ASN][1000 genomes]
rs35315440	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35437125	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35453005	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35537661	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35664932	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4147087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71628375	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71628376	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs875821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs875822	PBX1	cis	cerebellum	SCAN
rs875822	ATP1A2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165283600-165287800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165283800-165287200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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