Variant report

Variant	rs878941
Chromosome Location	chr15:39763239-39763240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10083552	1.00[EUR][1000 genomes]
rs11631131	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs16969307	1.00[EUR][1000 genomes]
rs16969364	1.00[EUR][1000 genomes]
rs16969365	1.00[EUR][1000 genomes]
rs16969384	1.00[EUR][1000 genomes]
rs16969484	1.00[EUR][1000 genomes]
rs41376748	1.00[EUR][1000 genomes]
rs41406047	1.00[EUR][1000 genomes]
rs41515347	1.00[EUR][1000 genomes]
rs58677957	1.00[EUR][1000 genomes]
rs58716252	1.00[EUR][1000 genomes]
rs59146042	1.00[EUR][1000 genomes]
rs61040173	1.00[EUR][1000 genomes]
rs7163020	1.00[EUR][1000 genomes]
rs7165434	0.85[AFR][1000 genomes]
rs7172057	1.00[EUR][1000 genomes]
rs8023525	1.00[EUR][1000 genomes]
rs8029417	1.00[EUR][1000 genomes]
rs8030643	1.00[EUR][1000 genomes]
rs8031289	1.00[EUR][1000 genomes]
rs8033803	1.00[EUR][1000 genomes]
rs8035627	1.00[EUR][1000 genomes]
rs8043342	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
2	chr15:39754600-39764600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:39754800-39763400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:39758200-39765200	Weak transcription	Right Atrium	heart
5	chr15:39758800-39764000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:39758800-39765200	Weak transcription	HSMM	muscle
7	chr15:39759600-39763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:39759800-39763400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:39759800-39764000	Weak transcription	NHLF	lung
10	chr15:39759800-39765200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:39759800-39766800	Weak transcription	Lung	lung
12	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
13	chr15:39760000-39764600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:39761000-39765200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:39761200-39763400	Weak transcription	NHDF-Ad	bronchial
16	chr15:39761200-39764600	Weak transcription	Adipose Nuclei	Adipose
17	chr15:39761200-39764600	Weak transcription	Osteobl	bone
18	chr15:39761200-39765000	Weak transcription	K562	blood
19	chr15:39761200-39765200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:39761400-39764400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:39761400-39765200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:39761400-39766200	Weak transcription	HUVEC	blood vessel
23	chr15:39761800-39765400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:39762200-39764600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:39762400-39764000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:39762600-39767200	Enhancers	Colon Smooth Muscle	Colon
27	chr15:39762800-39767200	Enhancers	Fetal Stomach	stomach
28	chr15:39763000-39767800	Enhancers	Fetal Lung	lung
29	chr15:39763200-39763600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr15:39763200-39764800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:39763200-39767800	Enhancers	Fetal Muscle Leg	muscle

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