Variant report

Variant	rs881073
Chromosome Location	chr21:17490718-17490719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16993244	0.91[YRI][hapmap]
rs16993384	1.00[AMR][1000 genomes]
rs16993387	1.00[AMR][1000 genomes]
rs16993393	1.00[AMR][1000 genomes]
rs16993394	1.00[AMR][1000 genomes]
rs16993505	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs16993558	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16993988	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs57469115	1.00[AMR][1000 genomes]
rs57936518	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58529486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59631437	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60167288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60300181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs881074	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs881076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17489400-17490800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr21:17489600-17490800	Active TSS	Brain Anterior Caudate	brain
3	chr21:17489600-17490800	Enhancers	Rectal Smooth Muscle	rectum
4	chr21:17490000-17490800	Active TSS	Right Atrium	heart
5	chr21:17490200-17490800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr21:17490200-17490800	Active TSS	Adipose Nuclei	Adipose
7	chr21:17490200-17490800	Enhancers	Brain Germinal Matrix	brain
8	chr21:17490200-17490800	Active TSS	Ovary	ovary
9	chr21:17490200-17490800	Active TSS	A549	lung
10	chr21:17490200-17490800	Enhancers	HSMMtube	muscle
11	chr21:17490200-17492200	Enhancers	NHDF-Ad	bronchial
12	chr21:17490400-17490800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr21:17490400-17490800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr21:17490400-17490800	Active TSS	Stomach Smooth Muscle	stomach
15	chr21:17490400-17490800	Flanking Active TSS	NH-A	brain
16	chr21:17490400-17491000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr21:17490400-17491600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr21:17490600-17490800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr21:17490600-17490800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr21:17490600-17490800	Active TSS	Colon Smooth Muscle	Colon
21	chr21:17490600-17490800	Flanking Active TSS	Osteobl	bone
22	chr21:17490600-17491600	Enhancers	HUVEC	blood vessel

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