Variant report

Variant	rs881410
Chromosome Location	chr11:4209570-4209571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:4205317..4208248-chr11:4208372..4210447,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10128557	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1036848	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10734407	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742250	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10767875	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767887	0.84[ASN][1000 genomes]
rs10767888	0.82[ASN][1000 genomes]
rs10835698	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10835716	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10835733	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10835739	0.87[ASN][1000 genomes]
rs10835740	0.83[ASN][1000 genomes]
rs11031217	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031218	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270217	0.97[ASN][1000 genomes]
rs1442724	0.87[ASN][1000 genomes]
rs2044137	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412365	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4243969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910603	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910917	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910923	0.83[ASN][1000 genomes]
rs6421039	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6578457	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6578460	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6578461	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7104032	0.83[ASN][1000 genomes]
rs7105300	0.83[ASN][1000 genomes]
rs7115352	0.81[ASN][1000 genomes]
rs7121040	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7949512	0.85[ASN][1000 genomes]
rs894458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs894460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9919530	0.98[ASN][1000 genomes]
rs9919651	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1053189	chr11:4123119-4359044	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1048590	chr11:4133055-4225100	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv540911	chr11:4133055-4225100	Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1053482	chr11:4138062-4276133	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv3380413	chr11:4159374-4323846	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv8777	chr11:4159953-4387268	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1045527	chr11:4162019-4225100	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv34983	chr11:4162474-4325792	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	esv2757417	chr11:4162477-4325792	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv818795	chr11:4167416-4238930	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv467662	chr11:4185595-4272343	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv553151	chr11:4185595-4272343	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv469627	chr11:4186981-4336490	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv482725	chr11:4186981-4336490	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv428799	chr11:4186981-4336490	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv471670	chr11:4186982-4336490	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv467663	chr11:4188188-4238930	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv553152	chr11:4188188-4238930	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv469932	chr11:4200169-4272343	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	esv3426224	chr11:4207601-4210149	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4208000-4209600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:4208200-4209600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:4208200-4209600	Active TSS	NHLF	lung
4	chr11:4208400-4209600	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr11:4208400-4209600	Active TSS	Hela-S3	cervix
6	chr11:4208800-4209600	Enhancers	GM12878-XiMat	blood
7	chr11:4209000-4209600	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:4209000-4209600	Enhancers	Liver	Liver
9	chr11:4209000-4209600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:4209000-4209600	Enhancers	Placenta	Placenta
11	chr11:4209000-4209600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:4209000-4209600	Enhancers	HUVEC	blood vessel
13	chr11:4209000-4209800	Enhancers	Colonic Mucosa	Colon
14	chr11:4209000-4209800	Enhancers	Fetal Lung	lung
15	chr11:4209000-4211600	Weak transcription	Left Ventricle	heart
16	chr11:4209000-4212000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:4209200-4209600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:4209200-4209600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:4209200-4209600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:4209200-4209600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:4209200-4209600	Bivalent Enhancer	Primary B cells from cord blood	blood
22	chr11:4209200-4209600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr11:4209200-4209600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:4209200-4209600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr11:4209200-4209600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:4209200-4209600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:4209200-4209600	Enhancers	Brain Angular Gyrus	brain
28	chr11:4209200-4209600	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr11:4209200-4209600	Enhancers	Esophagus	oesophagus
30	chr11:4209200-4209600	Enhancers	Fetal Heart	heart
31	chr11:4209200-4209600	Enhancers	Fetal Muscle Leg	muscle
32	chr11:4209200-4209600	Enhancers	Lung	lung
33	chr11:4209200-4209600	Enhancers	Right Atrium	heart
34	chr11:4209200-4209600	Enhancers	Right Ventricle	heart
35	chr11:4209200-4209600	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr11:4209200-4209600	Flanking Active TSS	K562	blood
37	chr11:4209200-4209800	Enhancers	Colon Smooth Muscle	Colon
38	chr11:4209200-4209800	Bivalent Enhancer	Fetal Stomach	stomach
39	chr11:4209200-4211200	Weak transcription	Psoas Muscle	Psoas
40	chr11:4209200-4213400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:4209400-4209600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr11:4209400-4209600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:4209400-4209600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
44	chr11:4209400-4209600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:4209400-4209600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:4209400-4209600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:4209400-4209600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr11:4209400-4209600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:4209400-4209600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:4209400-4209600	Enhancers	Muscle Satellite Cultured Cells	--

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