The 2.0 version of rSNPBase

Variant report

Variant rs882005
Chromosome Location chr4:143268348-143268349
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:143234800-143271800 Weak transcription Muscle Satellite Cultured Cells --
2 chr4:143256200-143269200 Weak transcription HSMMtube muscle
3 chr4:143256800-143269800 Weak transcription NHDF-Ad bronchial
4 chr4:143257600-143272000 Weak transcription Right Ventricle heart
5 chr4:143258000-143269200 Weak transcription Left Ventricle heart
6 chr4:143258000-143274800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr4:143258200-143274000 Weak transcription Dnd41 blood
8 chr4:143260200-143269200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr4:143260200-143272000 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr4:143262000-143269200 Weak transcription Primary T cells fromperipheralblood blood
11 chr4:143262000-143269200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr4:143262800-143271600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr4:143263000-143271600 Weak transcription HSMM muscle
14 chr4:143264000-143275400 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr4:143264600-143274400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr4:143265800-143270200 Enhancers HMEC breast
17 chr4:143265800-143280600 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr4:143266400-143269000 Enhancers Fetal Heart heart
19 chr4:143266800-143273000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr4:143267000-143268600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
21 chr4:143267000-143268600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr4:143267000-143268800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr4:143267000-143270600 Enhancers Fetal Lung lung
24 chr4:143267000-143270800 Enhancers Fetal Intestine Large intestine
25 chr4:143267200-143272000 Weak transcription Small Intestine intestine
26 chr4:143267200-143273200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr4:143267400-143270200 Enhancers Fetal Intestine Small intestine
28 chr4:143267400-143272000 Weak transcription Primary hematopoietic stem cells blood
29 chr4:143268000-143268400 Weak transcription Primary T cells from cord blood blood
30 chr4:143268000-143268400 Active TSS Primary T helper 17 cells PMA-I stimulated --
31 chr4:143268000-143268400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
32 chr4:143268000-143268400 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
33 chr4:143268000-143268400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
34 chr4:143268000-143269000 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr4:143268000-143270000 Enhancers NHEK skin
36 chr4:143268000-143270200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr4:143268000-143271400 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr4:143268200-143268400 Enhancers Primary T helper naive cells fromperipheralblood blood
39 chr4:143268200-143268600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
40 chr4:143268200-143269000 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr4:143268200-143269200 Weak transcription Duodenum Mucosa Duodenum
42 chr4:143268200-143269200 Weak transcription Stomach Mucosa stomach
43 chr4:143268200-143270200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015