The 2.0 version of rSNPBase

Variant report

Variant rs6825345
Chromosome Location chr4:143310817-143310818
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:143290400-143322000 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr4:143300200-143326200 Weak transcription Aorta Aorta
3 chr4:143301200-143326200 Weak transcription Gastric stomach
4 chr4:143301400-143316200 Weak transcription Dnd41 blood
5 chr4:143301600-143312400 Weak transcription Psoas Muscle Psoas
6 chr4:143301600-143317400 Weak transcription NH-A brain
7 chr4:143301600-143322800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr4:143301600-143323200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr4:143301600-143325400 Weak transcription Left Ventricle heart
10 chr4:143302200-143315000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr4:143302200-143316400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr4:143302200-143323000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr4:143305200-143321200 Weak transcription HSMMtube muscle
14 chr4:143305400-143311400 Weak transcription Small Intestine intestine
15 chr4:143305800-143313800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr4:143306000-143314800 Weak transcription NHEK skin
17 chr4:143306600-143320800 Weak transcription Primary hematopoietic stem cells blood
18 chr4:143307200-143318800 Enhancers Primary T killer memory cells from peripheral blood blood
19 chr4:143307600-143320800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr4:143307800-143314600 Enhancers Primary T helper cells fromperipheralblood blood
21 chr4:143307800-143314600 Weak transcription HMEC breast
22 chr4:143308200-143315800 Weak transcription HSMM muscle
23 chr4:143308200-143323200 Weak transcription Fetal Muscle Trunk muscle
24 chr4:143308600-143311000 Enhancers Primary T helper naive cells fromperipheralblood blood
25 chr4:143308600-143312800 Weak transcription Muscle Satellite Cultured Cells --
26 chr4:143309000-143323200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr4:143309000-143323400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr4:143309400-143311800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr4:143309400-143315600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr4:143309400-143317600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr4:143309400-143320600 Weak transcription Primary T cells from cord blood blood
32 chr4:143309600-143313400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr4:143309800-143312200 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr4:143309800-143316000 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr4:143310000-143315600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr4:143310000-143316600 Enhancers Primary T helper naive cells from peripheral blood blood
37 chr4:143310000-143317800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr4:143310200-143317400 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr4:143310400-143312400 Weak transcription Primary T cells fromperipheralblood blood
40 chr4:143310800-143311400 Flanking Active TSS Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015