Variant report

Variant	rs983767
Chromosome Location	chr4:143329202-143329203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr4:143328992-143329640	A549	lung:	n/a	chr4:143329212-143329221 chr4:143329213-143329222
2	POLR2A	chr4:143329141-143329525	SK-N-SH	brain:	n/a	n/a
3	CHD2	chr4:143328801-143329781	Hela-S3	cervix:	n/a	n/a
4	NFIC	chr4:143329161-143329750	ECC-1	luminal epithelium:	n/a	n/a
5	EP300	chr4:143328928-143329772	SK-N-SH	brain:	n/a	chr4:143329212-143329221 chr4:143329213-143329222 chr4:143329415-143329429
6	CEBPB	chr4:143328758-143329568	ECC-1	luminal epithelium:	n/a	n/a
7	STAT3	chr4:143328547-143329620	MCF10A-Er-Src	breast:	n/a	chr4:143328569-143328589 chr4:143328572-143328586 chr4:143328575-143328583 chr4:143329212-143329221 chr4:143329213-143329222
8	EP300	chr4:143329055-143329358	SK-N-SH_RA	brain:	n/a	chr4:143329212-143329221 chr4:143329213-143329222
9	CEBPB	chr4:143328675-143329756	A549	lung:	n/a	n/a
10	PBX3	chr4:143329159-143329570	A549	lung:	n/a	n/a
11	SP1	chr4:143328783-143329834	A549	lung:	n/a	n/a
12	FOSL2	chr4:143328720-143329729	A549	lung:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
13	CEBPB	chr4:143328829-143329661	A549	lung:	n/a	n/a
14	EP300	chr4:143328866-143329802	A549	lung:	n/a	chr4:143329212-143329221 chr4:143329213-143329222 chr4:143329415-143329429
15	EP300	chr4:143328688-143329847	A549	lung:	n/a	chr4:143329212-143329221 chr4:143329213-143329222 chr4:143329415-143329429
16	NFIC	chr4:143328977-143329579	SK-N-SH	brain:	n/a	n/a
17	FOS	chr4:143328862-143329510	MCF10A-Er-Src	breast:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
18	STAT3	chr4:143328413-143329597	MCF10A-Er-Src	breast:	n/a	chr4:143328569-143328589 chr4:143328572-143328586 chr4:143328575-143328583 chr4:143329212-143329221 chr4:143329213-143329222
19	FOS	chr4:143328935-143329541	HUVEC	blood vessel:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
20	FOS	chr4:143328823-143330281	MCF10A-Er-Src	breast:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221 chr4:143330185-143330197
21	JUND	chr4:143329079-143329609	SK-N-SH	brain:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
22	RXRA	chr4:143329137-143329593	SK-N-SH	brain:	n/a	chr4:143329212-143329221 chr4:143329213-143329222
23	JUN	chr4:143329081-143329493	HUVEC	blood vessel:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
24	EP300	chr4:143328796-143329505	Hela-S3	cervix:	n/a	chr4:143329212-143329221 chr4:143329213-143329222 chr4:143329415-143329429
25	TEAD4	chr4:143328966-143329826	A549	lung:	n/a	n/a
26	STAT3	chr4:143329060-143329636	MCF10A-Er-Src	breast:	n/a	chr4:143329212-143329221 chr4:143329213-143329222
27	CEBPB	chr4:143328577-143329755	HCT-116	colon:	n/a	n/a
28	FOSL1	chr4:143328684-143329731	HCT-116	colon:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
29	EP300	chr4:143329103-143329773	ECC-1	luminal epithelium:	n/a	chr4:143329212-143329221 chr4:143329213-143329222 chr4:143329415-143329429
30	SP1	chr4:143328599-143329784	HCT-116	colon:	n/a	n/a
31	MEF2A	chr4:143328906-143329557	SK-N-SH	brain:	n/a	n/a
32	FOSL2	chr4:143329005-143329579	A549	lung:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
33	TCF12	chr4:143329150-143329775	ECC-1	luminal epithelium:	n/a	n/a
34	TEAD4	chr4:143329062-143329593	SK-N-SH	brain:	n/a	n/a
35	CEBPB	chr4:143328825-143329652	A549	lung:	n/a	n/a
36	USF1	chr4:143329083-143329519	A549	lung:	n/a	n/a
37	JUND	chr4:143328643-143329586	HCT-116	colon:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
38	ESR1	chr4:143329044-143329864	ECC-1	luminal epithelium:	n/a	chr4:143329474-143329489
39	TCF12	chr4:143329060-143329557	A549	lung:	n/a	n/a
40	ATF3	chr4:143328695-143329751	HCT-116	colon:	n/a	n/a
41	CEBPB	chr4:143329129-143329580	MCF-7	breast:	n/a	n/a
42	NR3C1	chr4:143329077-143329728	A549	lung:	n/a	n/a
43	JUND	chr4:143328677-143329667	HCT-116	colon:	n/a	chr4:143329213-143329221 chr4:143329213-143329222 chr4:143329214-143329221
44	NR3C1	chr4:143329140-143329674	A549	lung:	n/a	n/a
45	TCF12	chr4:143328967-143329766	SK-N-SH	brain:	n/a	n/a
46	GATA2	chr4:143328862-143329625	HUVEC	blood vessel:	n/a	chr4:143329140-143329149
47	GABPA	chr4:143328945-143329584	A549	lung:	n/a	n/a
48	TEAD4	chr4:143329075-143329765	ECC-1	luminal epithelium:	n/a	n/a
49	MYC	chr4:143328997-143329597	MCF10A-Er-Src	breast:	n/a	chr4:143329212-143329221 chr4:143329213-143329222
50	POLR2A	chr4:143328984-143329320	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:143327592..143330271-chr4:143378912..143381553,2	MCF-7	breast:
2	chr4:143327221..143331819-chr4:143394116..143397905,6	MCF-7	breast:
3	chr4:143327412..143330052-chr4:143383937..143385936,2	MCF-7	breast:
4	chr4:143327600..143329351-chr4:143391019..143392587,2	MCF-7	breast:
5	chr4:143326852..143329330-chr4:143520781..143523143,2	MCF-7	breast:
6	chr4:143323626..143325827-chr4:143327783..143329444,2	MCF-7	breast:
7	chr4:143326578..143329374-chr4:143334403..143336752,2	MCF-7	breast:

Variant related genes	Relation type
INPP4B	TF binding region
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11722756	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12511267	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13128245	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13135641	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13138212	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13140802	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1489577	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489578	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497389	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1565306	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1982966	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2173209	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306913	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34830426	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35151914	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3775703	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775705	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775706	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775710	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775711	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3822157	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6825345	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72724560	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72724579	0.81[EUR][1000 genomes]
rs7699598	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs881611	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv968011	chr4:143325315-143333139	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143326400-143330400	Enhancers	Hela-S3	cervix
2	chr4:143327000-143330000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:143327000-143330000	Enhancers	HUVEC	blood vessel
4	chr4:143327000-143330400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:143327200-143329400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:143327200-143330000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:143327200-143330200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:143327200-143330200	Enhancers	NH-A	brain
9	chr4:143327400-143329600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:143327400-143330000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:143327400-143330600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:143327600-143330400	Enhancers	HSMM	muscle
13	chr4:143327600-143331200	Enhancers	NHEK	skin
14	chr4:143327600-143335600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:143327800-143329400	Enhancers	Fetal Heart	heart
16	chr4:143327800-143330000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:143327800-143330000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:143327800-143330200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:143327800-143330600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:143327800-143335600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:143328000-143330000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:143328000-143330000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:143328000-143330000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:143328000-143330400	Enhancers	A549	lung
25	chr4:143328200-143329400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:143328200-143329600	Enhancers	Dnd41	blood
27	chr4:143328200-143330000	Enhancers	Osteobl	bone
28	chr4:143328400-143331600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr4:143328400-143331600	Enhancers	HMEC	breast
30	chr4:143328600-143330400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:143328600-143330400	Enhancers	NHDF-Ad	bronchial
32	chr4:143328600-143330600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:143328600-143335200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:143328600-143336400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr4:143328800-143329600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:143328800-143329600	Enhancers	Psoas Muscle	Psoas
37	chr4:143328800-143329800	Weak transcription	Stomach Mucosa	stomach
38	chr4:143328800-143332600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:143328800-143334200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:143329000-143329600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:143329000-143329600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:143329000-143329800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:143329000-143329800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr4:143329000-143329800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:143329000-143330000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:143329000-143330400	Enhancers	Primary T cells from cord blood	blood
47	chr4:143329000-143330400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr4:143329000-143330600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:143329000-143330600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr4:143329000-143331000	Weak transcription	Thymus	Thymus

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