Variant report

Variant	rs882221
Chromosome Location	chr9:101731087-101731088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101725948..101728379-chr9:101730817..101734324,5	K562	blood:
2	chr9:101730419..101734076-chr9:101735799..101737834,3	MCF-7	breast:
3	chr9:101549472..101553559-chr9:101729107..101732873,3	K562	blood:
4	chr9:101730074..101732090-chr9:101735331..101737344,2	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10988397	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12005047	0.84[EUR][1000 genomes]
rs2151616	0.89[EUR][1000 genomes]
rs60355315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs882728	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101722200-101737200	Weak transcription	Gastric	stomach
2	chr9:101722400-101733400	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:101724000-101736200	Weak transcription	Pancreas	Pancrea
4	chr9:101724400-101731800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101724400-101733800	Weak transcription	Colonic Mucosa	Colon
6	chr9:101725600-101733400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:101725600-101734000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:101725800-101733200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:101726200-101732200	Weak transcription	Fetal Heart	heart
10	chr9:101727400-101733000	Weak transcription	Esophagus	oesophagus
11	chr9:101727600-101733400	Weak transcription	Ovary	ovary
12	chr9:101728000-101733200	Weak transcription	NHDF-Ad	bronchial
13	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
14	chr9:101728200-101733000	Weak transcription	HSMMtube	muscle
15	chr9:101728800-101733400	Weak transcription	Left Ventricle	heart
16	chr9:101728800-101733400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:101729600-101731200	Enhancers	Colon Smooth Muscle	Colon
18	chr9:101729800-101731200	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr9:101729800-101731400	Genic enhancers	Fetal Muscle Leg	muscle
20	chr9:101730000-101733000	Weak transcription	Placenta	Placenta
21	chr9:101730200-101731600	Genic enhancers	Stomach Smooth Muscle	stomach
22	chr9:101730200-101733000	Weak transcription	Fetal Stomach	stomach
23	chr9:101730600-101732000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:101730800-101731200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:101730800-101731200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:101730800-101731400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr9:101730800-101731400	Enhancers	K562	blood
28	chr9:101730800-101731600	Enhancers	Adipose Nuclei	Adipose
29	chr9:101730800-101733000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:101730800-101733000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr9:101730800-101733400	Weak transcription	Right Atrium	heart
32	chr9:101730800-101733800	Weak transcription	Right Ventricle	heart
33	chr9:101731000-101735800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:101731000-101737400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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