Variant report

Variant	rs882728
Chromosome Location	chr9:101730236-101730237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101724437..101726903-chr9:101729034..101731054,2	MCF-7	breast:
2	chr9:101715741..101718896-chr9:101727894..101730962,3	K562	blood:
3	chr9:101549472..101553559-chr9:101729107..101732873,3	K562	blood:
4	chr9:101730074..101732090-chr9:101735331..101737344,2	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10988397	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12005047	0.90[CEU][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs2151616	1.00[ASW][hapmap];0.95[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60355315	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs882221	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs882728	HIATL1	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101722200-101737200	Weak transcription	Gastric	stomach
2	chr9:101722400-101733400	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:101724000-101736200	Weak transcription	Pancreas	Pancrea
4	chr9:101724400-101731800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101724400-101733800	Weak transcription	Colonic Mucosa	Colon
6	chr9:101725600-101733400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:101725600-101734000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:101725800-101730800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:101725800-101733200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:101726200-101732200	Weak transcription	Fetal Heart	heart
11	chr9:101727400-101733000	Weak transcription	Esophagus	oesophagus
12	chr9:101727600-101733400	Weak transcription	Ovary	ovary
13	chr9:101728000-101733200	Weak transcription	NHDF-Ad	bronchial
14	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
15	chr9:101728200-101733000	Weak transcription	HSMMtube	muscle
16	chr9:101728800-101731000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:101728800-101733400	Weak transcription	Left Ventricle	heart
18	chr9:101728800-101733400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:101729400-101730800	Enhancers	Right Ventricle	heart
20	chr9:101729600-101731200	Enhancers	Colon Smooth Muscle	Colon
21	chr9:101729800-101730800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:101729800-101730800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:101729800-101731200	Genic enhancers	Fetal Muscle Trunk	muscle
24	chr9:101729800-101731400	Genic enhancers	Fetal Muscle Leg	muscle
25	chr9:101730000-101730600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:101730000-101730800	Genic enhancers	Adipose Nuclei	Adipose
27	chr9:101730000-101733000	Weak transcription	Placenta	Placenta
28	chr9:101730200-101730400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:101730200-101730600	Weak transcription	Right Atrium	heart
30	chr9:101730200-101730600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
31	chr9:101730200-101731600	Genic enhancers	Stomach Smooth Muscle	stomach
32	chr9:101730200-101733000	Weak transcription	Fetal Stomach	stomach

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