Variant report

Variant	rs882870
Chromosome Location	chr10:116453733-116453734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1029789	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885597	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196855	0.85[CEU][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs11196864	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs11196872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11196874	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196904	0.82[CHB][hapmap]
rs1413198	0.86[CEU][hapmap]
rs1968122	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs217194	0.87[ASN][1000 genomes]
rs4751639	0.85[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs4752114	0.90[ASN][1000 genomes]
rs703347	0.85[ASN][1000 genomes]
rs703348	0.85[ASN][1000 genomes]
rs7075935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7100793	0.95[ASN][1000 genomes]
rs719895	0.84[ASN][1000 genomes]
rs719896	0.85[ASN][1000 genomes]
rs7912645	0.82[CHB][hapmap]
rs808253	0.85[ASN][1000 genomes]
rs808256	0.85[ASN][1000 genomes]
rs808259	0.85[ASN][1000 genomes]
rs808346	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116444400-116457200	Weak transcription	Esophagus	oesophagus
2	chr10:116445600-116454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116445600-116455800	Weak transcription	Right Ventricle	heart
4	chr10:116445800-116454400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:116446000-116459200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:116446200-116456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:116448000-116455600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:116448400-116455800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:116451000-116455600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:116451200-116464600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:116451600-116454400	Weak transcription	HUVEC	blood vessel
12	chr10:116451800-116453800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:116451800-116454600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr10:116451800-116456000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:116451800-116456600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:116451800-116456600	Weak transcription	NHEK	skin
17	chr10:116451800-116456800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:116452000-116453800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:116452000-116453800	Weak transcription	Fetal Heart	heart
20	chr10:116452000-116454000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:116452000-116454400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:116452000-116454400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:116452000-116456800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:116452000-116456800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:116452000-116456800	Weak transcription	NH-A	brain
26	chr10:116452200-116456000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:116452200-116456000	Weak transcription	HMEC	breast
28	chr10:116452200-116456600	Weak transcription	Hela-S3	cervix
29	chr10:116452200-116456800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:116452400-116454200	Enhancers	Left Ventricle	heart
31	chr10:116452600-116454400	Enhancers	HSMM	muscle
32	chr10:116452800-116453800	Weak transcription	A549	lung
33	chr10:116452800-116454800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:116453000-116454800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:116453000-116457200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:116453200-116453800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:116453200-116454800	Enhancers	Primary T cells from cord blood	blood
38	chr10:116453200-116454800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr10:116453400-116453800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:116453400-116454000	Weak transcription	Right Atrium	heart
41	chr10:116453400-116454800	Enhancers	HSMMtube	muscle
42	chr10:116453600-116454400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:116453600-116454600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:116453600-116454600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr10:116453600-116454800	Enhancers	Primary T helper cells PMA-I stimulated	--

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