Variant report

Variant	rs808346
Chromosome Location	chr10:116530140-116530141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116529761..116532511-chr10:116581268..116583823,3	MCF-7	breast:
2	chr10:116528299..116531150-chr10:116536234..116538726,2	MCF-7	breast:
3	chr10:116512788..116514605-chr10:116528016..116530958,2	MCF-7	breast:
4	chr10:116520053..116522860-chr10:116528096..116531529,3	K562	blood:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10885595	0.82[CHB][hapmap]
rs10885601	0.81[ASN][1000 genomes]
rs10885603	0.86[ASN][1000 genomes]
rs10885605	0.81[ASN][1000 genomes]
rs10885606	0.97[ASN][1000 genomes]
rs10885610	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11196864	0.81[CHB][hapmap]
rs11196874	0.82[CHB][hapmap]
rs11196903	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11196904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11196905	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs11196909	0.82[ASN][1000 genomes]
rs11196917	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12098336	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12220314	0.97[ASN][1000 genomes]
rs1746028	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2420064	0.96[ASN][1000 genomes]
rs34253301	0.96[ASN][1000 genomes]
rs34621187	0.97[ASN][1000 genomes]
rs36007276	0.95[ASN][1000 genomes]
rs703349	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7073831	0.90[ASN][1000 genomes]
rs7075935	0.82[CHB][hapmap]
rs7077074	0.97[ASN][1000 genomes]
rs7080397	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7082487	0.97[ASN][1000 genomes]
rs7089072	0.93[ASN][1000 genomes]
rs7090491	0.80[ASN][1000 genomes]
rs7095432	0.97[ASN][1000 genomes]
rs7098990	0.93[ASN][1000 genomes]
rs7899479	0.83[ASN][1000 genomes]
rs7908984	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7912645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs808263	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs808279	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs808281	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs808282	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808283	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs808290	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs808291	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs808294	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs808295	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs808296	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs808298	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs808299	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808301	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs808305	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs808306	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs808307	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs808314	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs808322	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs808332	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808339	0.80[EUR][1000 genomes]
rs808340	0.83[ASN][1000 genomes]
rs808342	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs808350	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808351	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs808353	0.81[ASN][1000 genomes]
rs808355	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs808357	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs882870	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528400-116531800	Weak transcription	HUVEC	blood vessel
2	chr10:116528400-116531800	Weak transcription	NH-A	brain
3	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:116528800-116531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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