Variant report

Variant	rs808299
Chromosome Location	chr10:116522027-116522028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116520053..116522860-chr10:116528096..116531529,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10885601	0.84[ASN][1000 genomes]
rs10885603	0.89[ASN][1000 genomes]
rs10885606	0.94[ASN][1000 genomes]
rs11196903	0.98[ASN][1000 genomes]
rs11196904	0.98[ASN][1000 genomes]
rs11196905	0.80[ASN][1000 genomes]
rs12098336	0.92[ASN][1000 genomes]
rs12220314	0.94[ASN][1000 genomes]
rs2420064	0.93[ASN][1000 genomes]
rs34253301	0.93[ASN][1000 genomes]
rs34621187	0.94[ASN][1000 genomes]
rs36007276	0.92[ASN][1000 genomes]
rs703349	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7073831	0.88[ASN][1000 genomes]
rs7077074	0.94[ASN][1000 genomes]
rs7080397	0.98[ASN][1000 genomes]
rs7082487	0.94[ASN][1000 genomes]
rs7089072	0.90[ASN][1000 genomes]
rs7090491	0.82[ASN][1000 genomes]
rs7095432	0.94[ASN][1000 genomes]
rs7098990	0.90[ASN][1000 genomes]
rs7899479	0.80[ASN][1000 genomes]
rs7908984	0.92[ASN][1000 genomes]
rs7912645	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs808251	0.80[EUR][1000 genomes]
rs808263	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs808279	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs808281	0.86[EUR][1000 genomes]
rs808282	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs808283	0.84[EUR][1000 genomes]
rs808291	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808294	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs808295	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs808296	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs808298	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs808301	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808305	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808306	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808307	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs808314	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs808322	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs808332	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs808339	0.83[EUR][1000 genomes]
rs808340	0.85[ASN][1000 genomes]
rs808342	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs808344	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs808346	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808350	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs808351	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs808353	0.84[ASN][1000 genomes]
rs808355	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs808357	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116513800-116527000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116515000-116527400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116515600-116524400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:116515600-116526200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:116518000-116526400	Weak transcription	Brain Anterior Caudate	brain
6	chr10:116518400-116526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:116521400-116525000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:116521400-116525600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:116521600-116522600	Weak transcription	Left Ventricle	heart
10	chr10:116521600-116524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:116521600-116525600	Weak transcription	Right Atrium	heart
12	chr10:116521600-116526200	Weak transcription	Right Ventricle	heart
13	chr10:116521800-116522600	Weak transcription	Fetal Heart	heart
14	chr10:116521800-116525600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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