Variant report

Variant	rs7077074
Chromosome Location	chr10:116539304-116539305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116484261..116485769-chr10:116537705..116539311,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160B1-1	chr10:116537710-116539662	ENSG00000228484
2	lnc-FAM160B1-1	chr10:116538334-116539662	NONHSAT016463

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10885601	0.83[ASN][1000 genomes]
rs10885603	0.88[ASN][1000 genomes]
rs10885605	0.83[ASN][1000 genomes]
rs10885606	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885608	0.82[ASN][1000 genomes]
rs10885610	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11196903	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11196904	0.97[ASN][1000 genomes]
rs11196909	0.84[ASN][1000 genomes]
rs11196917	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12098336	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12220314	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013017	0.84[EUR][1000 genomes]
rs2420064	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34253301	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34621187	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007276	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs703349	0.96[ASN][1000 genomes]
rs7073831	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7080397	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082487	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089072	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7090491	0.81[ASN][1000 genomes]
rs7095432	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098990	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7899479	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7907889	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7908984	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7912645	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs808263	0.81[ASN][1000 genomes]
rs808281	0.83[ASN][1000 genomes]
rs808282	0.85[ASN][1000 genomes]
rs808291	0.97[ASN][1000 genomes]
rs808294	0.96[ASN][1000 genomes]
rs808295	0.96[ASN][1000 genomes]
rs808296	0.96[ASN][1000 genomes]
rs808298	0.96[ASN][1000 genomes]
rs808299	0.94[ASN][1000 genomes]
rs808301	0.91[ASN][1000 genomes]
rs808305	0.90[ASN][1000 genomes]
rs808306	0.90[ASN][1000 genomes]
rs808307	0.87[ASN][1000 genomes]
rs808314	0.86[ASN][1000 genomes]
rs808322	0.85[ASN][1000 genomes]
rs808332	0.83[ASN][1000 genomes]
rs808340	0.83[ASN][1000 genomes]
rs808342	0.83[ASN][1000 genomes]
rs808344	0.99[ASN][1000 genomes]
rs808346	0.97[ASN][1000 genomes]
rs808350	0.83[ASN][1000 genomes]
rs808351	0.83[ASN][1000 genomes]
rs808353	0.81[ASN][1000 genomes]
rs808355	0.81[ASN][1000 genomes]
rs808357	0.81[ASN][1000 genomes]
rs8181373	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116533400-116548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:116538200-116540000	Enhancers	Hela-S3	cervix
5	chr10:116538200-116540800	Enhancers	Fetal Lung	lung
6	chr10:116538400-116540800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:116538400-116540800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr10:116538400-116541000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:116538400-116541000	Enhancers	HMEC	breast
10	chr10:116538400-116541000	Enhancers	HUVEC	blood vessel
11	chr10:116538400-116541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:116538600-116541000	Enhancers	NHEK	skin
13	chr10:116539000-116540600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:116539000-116540600	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:116539000-116540800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:116539000-116540800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:116539000-116541000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:116539000-116541000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr10:116539000-116541000	Enhancers	NH-A	brain
20	chr10:116539200-116539600	Flanking Active TSS	A549	lung
21	chr10:116539200-116539800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:116539200-116540000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr10:116539200-116540600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:116539200-116540600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:116539200-116540800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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