Variant report

Variant	rs808281
Chromosome Location	chr10:116554802-116554803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10885606	0.83[ASN][1000 genomes]
rs10885610	0.99[ASN][1000 genomes]
rs11196904	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11196917	0.99[ASN][1000 genomes]
rs11196918	0.80[ASN][1000 genomes]
rs12098336	0.85[ASN][1000 genomes]
rs12220314	0.83[ASN][1000 genomes]
rs12573079	0.80[ASN][1000 genomes]
rs1746028	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2420064	0.84[ASN][1000 genomes]
rs34253301	0.84[ASN][1000 genomes]
rs34621187	0.83[ASN][1000 genomes]
rs36007276	0.85[ASN][1000 genomes]
rs703349	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7073831	0.87[ASN][1000 genomes]
rs7077074	0.83[ASN][1000 genomes]
rs7082487	0.82[ASN][1000 genomes]
rs7089072	0.85[ASN][1000 genomes]
rs7095432	0.83[ASN][1000 genomes]
rs7098990	0.85[ASN][1000 genomes]
rs7899479	0.97[ASN][1000 genomes]
rs7907889	0.82[ASN][1000 genomes]
rs7908984	0.88[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7912645	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs808279	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808282	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs808283	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs808290	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs808291	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs808294	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs808295	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs808296	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs808298	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs808299	0.86[EUR][1000 genomes]
rs808301	0.81[EUR][1000 genomes]
rs808322	0.80[EUR][1000 genomes]
rs808344	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs808346	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116549000-116556000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116553200-116555200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr10:116553400-116556200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:116553800-116555800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:116553800-116559400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:116554000-116555000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:116554000-116555800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:116554400-116555200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:116554800-116555200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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