Variant report

Variant	rs10885605
Chromosome Location	chr10:116533956-116533957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116531753..116534346-chr10:116628137..116630750,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10885596	1.00[CEU][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap]
rs10885600	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885602	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10885606	0.83[ASN][1000 genomes]
rs10885608	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11196811	0.83[MKK][hapmap]
rs11196865	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap]
rs11196873	0.92[CEU][hapmap];0.85[MEX][hapmap]
rs11196876	1.00[CEU][hapmap]
rs11196877	1.00[CEU][hapmap]
rs11196898	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11196903	0.80[ASN][1000 genomes]
rs11196904	0.83[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs11196905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11196909	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11196912	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11196916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11196918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12098336	0.81[ASN][1000 genomes]
rs12220314	0.83[ASN][1000 genomes]
rs12573079	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2420064	0.82[ASN][1000 genomes]
rs34253301	0.82[ASN][1000 genomes]
rs34621187	0.83[ASN][1000 genomes]
rs36007276	0.81[ASN][1000 genomes]
rs3926347	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61869110	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67774070	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7077074	0.83[ASN][1000 genomes]
rs7080397	0.80[ASN][1000 genomes]
rs7082487	0.84[ASN][1000 genomes]
rs7090491	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7095432	0.83[ASN][1000 genomes]
rs7908984	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7912645	0.83[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs808291	0.80[ASN][1000 genomes]
rs808302	0.90[ASN][1000 genomes]
rs808303	0.90[ASN][1000 genomes]
rs808344	0.83[ASN][1000 genomes]
rs808346	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs8181373	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv516803	chr10:116528294-116556846	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10885605	KIAA1598	cis	parietal	SCAN
rs10885605	PRDM8	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116528600-116539600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:116528600-116540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:116533200-116538400	Weak transcription	HUVEC	blood vessel
4	chr10:116533400-116548600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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