Variant report

Variant	rs808339
Chromosome Location	chr10:116494271-116494272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs703349	0.86[EUR][1000 genomes]
rs808251	0.90[EUR][1000 genomes]
rs808263	0.93[EUR][1000 genomes]
rs808294	0.86[EUR][1000 genomes]
rs808295	0.87[EUR][1000 genomes]
rs808296	0.86[EUR][1000 genomes]
rs808298	0.86[EUR][1000 genomes]
rs808299	0.83[EUR][1000 genomes]
rs808301	0.91[EUR][1000 genomes]
rs808305	0.93[EUR][1000 genomes]
rs808306	0.93[EUR][1000 genomes]
rs808307	0.93[EUR][1000 genomes]
rs808314	0.93[EUR][1000 genomes]
rs808322	0.94[EUR][1000 genomes]
rs808332	0.96[EUR][1000 genomes]
rs808340	0.84[EUR][1000 genomes]
rs808342	0.96[EUR][1000 genomes]
rs808346	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs808350	0.96[EUR][1000 genomes]
rs808351	0.96[EUR][1000 genomes]
rs808353	0.84[EUR][1000 genomes]
rs808355	0.96[EUR][1000 genomes]
rs808357	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116486600-116497000	Weak transcription	Lung	lung
2	chr10:116486800-116494400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:116486800-116514600	Weak transcription	Pancreas	Pancrea
4	chr10:116489000-116494400	Weak transcription	Gastric	stomach
5	chr10:116492800-116494600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:116492800-116494600	Enhancers	Stomach Mucosa	stomach
7	chr10:116493000-116494400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:116493800-116494400	Enhancers	Left Ventricle	heart
9	chr10:116493800-116494400	Enhancers	Right Atrium	heart
10	chr10:116493800-116494400	Enhancers	Right Ventricle	heart
11	chr10:116494000-116494800	Enhancers	Fetal Heart	heart

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