Variant report

Variant	rs886136
Chromosome Location	chr19:35664807-35664808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35660384..35663163-chr19:35664605..35666174,2	MCF-7	breast:
2	chr19:35659935..35661802-chr19:35663380..35667024,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110	0.84[EUR][1000 genomes]
rs12710029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623779	0.82[EUR][1000 genomes]
rs1624046	0.91[EUR][1000 genomes]
rs1672994	0.80[EUR][1000 genomes]
rs1688008	0.82[EUR][1000 genomes]
rs1688045	0.83[EUR][1000 genomes]
rs4805110	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7258030	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs756845	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8106303	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2757694	chr19:35653642-35673333	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758757	chr19:35653642-35673333	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
7	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
8	esv3503601	chr19:35659912-35666960	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3503603	chr19:35660362-35666860	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv516540	chr19:35660450-35685536	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3503604	chr19:35660647-35665984	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv579359	chr19:35660752-35665515	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv579360	chr19:35660752-35665573	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv9709	chr19:35660761-35667329	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv9184	chr19:35660864-35665915	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	esv3318519	chr19:35660887-35665907	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	esv3318520	chr19:35660942-35665841	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv3318517	chr19:35660977-35665872	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv828532	chr19:35660979-35665004	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv828533	chr19:35660979-35667253	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	esv3503602	chr19:35661022-35665848	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv3503605	chr19:35661022-35665848	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	esv3318521	chr19:35661066-35665802	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv498898	chr19:35661079-35665800	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	esv3318522	chr19:35661080-35665800	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	esv13653	chr19:35661185-35666238	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	nsv828534	chr19:35661262-35665004	Genic enhancers ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	nsv819243	chr19:35661284-35666027	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	esv3318760	chr19:35661512-35667610	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	esv3318761	chr19:35661512-35667610	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
31	nsv579364	chr19:35661787-35664964	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
32	nsv579365	chr19:35661787-35665515	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv579366	chr19:35661787-35665573	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
34	nsv579367	chr19:35661787-35665930	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv817831	chr19:35661787-35673243	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
36	nsv579368	chr19:35661787-35680002	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
37	nsv828535	chr19:35661994-35665004	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
38	nsv514896	chr19:35662192-35664852	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
39	nsv579372	chr19:35662228-35664807	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
40	nsv579373	chr19:35662228-35665515	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
41	nsv579374	chr19:35662228-35665573	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
42	nsv579375	chr19:35662228-35665930	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
43	nsv579376	chr19:35662257-35665573	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
44	nsv579377	chr19:35662257-35673243	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
45	nsv579378	chr19:35662766-35664964	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
46	nsv579379	chr19:35662766-35665515	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
47	nsv579380	chr19:35662766-35665573	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
48	nsv579381	chr19:35662766-35665930	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
49	nsv579382	chr19:35662787-35665515	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
50	nsv579383	chr19:35662787-35665573	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs886136	HSPB6	cis	Nerve Tibial	GTEx
rs886136	AC002398.12	cis	Nerve Tibial	GTEx
rs886136	FXYD5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35653600-35667400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:35655200-35667600	Weak transcription	Colonic Mucosa	Colon
3	chr19:35657600-35666800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:35657800-35666800	Weak transcription	Right Ventricle	heart
5	chr19:35658000-35667000	Weak transcription	HSMM	muscle
6	chr19:35658200-35666800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr19:35658200-35666800	Weak transcription	Osteobl	bone
8	chr19:35658800-35667200	Weak transcription	NH-A	brain
9	chr19:35659400-35665600	Weak transcription	A549	lung
10	chr19:35659600-35666800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:35659600-35667000	Weak transcription	GM12878-XiMat	blood
12	chr19:35659800-35666400	Weak transcription	Esophagus	oesophagus
13	chr19:35660800-35673400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:35661000-35666800	Weak transcription	Lung	lung
15	chr19:35661200-35666000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr19:35661400-35667000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:35661600-35666600	Weak transcription	NHEK	skin
18	chr19:35661800-35666000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr19:35661800-35666200	Weak transcription	Placenta	Placenta
20	chr19:35661800-35666800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr19:35661800-35666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr19:35661800-35666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:35661800-35666800	Weak transcription	NHLF	lung
24	chr19:35661800-35668600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr19:35661800-35670000	Weak transcription	Thymus	Thymus
26	chr19:35661800-35673400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr19:35662000-35665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:35662000-35666800	Weak transcription	HMEC	breast
29	chr19:35662600-35665200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr19:35662800-35666200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:35662800-35666600	Weak transcription	NHDF-Ad	bronchial
32	chr19:35663000-35665200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr19:35663000-35667200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr19:35663200-35665400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:35663200-35666000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr19:35663400-35666000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr19:35663400-35666600	Weak transcription	Spleen	Spleen
38	chr19:35663400-35666800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:35663400-35666800	Weak transcription	Adipose Nuclei	Adipose
40	chr19:35663400-35667200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:35663600-35666000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:35663600-35666800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:35663800-35666800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr19:35663800-35667200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr19:35663800-35667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr19:35664000-35666800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr19:35664000-35666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr19:35664000-35666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr19:35664000-35667000	Weak transcription	Fetal Intestine Small	intestine
50	chr19:35664000-35668200	Weak transcription	Primary T cells fromperipheralblood	blood

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