Variant report

Variant	rs886583
Chromosome Location	chr7:96625279-96625280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1114319	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1114320	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12704907	0.84[AMR][1000 genomes]
rs2394557	0.84[AMR][1000 genomes]
rs4729325	1.00[AMR][1000 genomes]
rs917046	0.81[AMR][1000 genomes]
rs9641200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96624600-96626000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:96625000-96625600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr7:96625000-96625600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr7:96625000-96625600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:96625000-96644000	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr7:96625200-96626000	Active TSS	Brain Germinal Matrix	brain
7	chr7:96625200-96631800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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