Variant report

Variant	rs4729325
Chromosome Location	chr7:96621667-96621668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96618838..96621788-chr7:96624479..96627532,3	K562	blood:
2	chr7:96616855..96619482-chr7:96620505..96622998,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1005169	0.82[CEU][hapmap]
rs1034759	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap]
rs1114319	0.81[AMR][1000 genomes]
rs1114320	0.81[AMR][1000 genomes]
rs1207733	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap]
rs12704907	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2394557	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs886583	1.00[AMR][1000 genomes]
rs917046	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs9641200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96621200-96621800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96621200-96622000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:96621200-96622400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:96621200-96622800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:96621400-96621800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:96621400-96621800	Bivalent Enhancer	Colon Smooth Muscle	Colon
7	chr7:96621400-96622000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:96621400-96622000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr7:96621400-96622000	Bivalent Enhancer	Small Intestine	intestine
10	chr7:96621400-96622200	Bivalent Enhancer	Fetal Brain Male	brain
11	chr7:96621400-96622400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr7:96621400-96623000	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr7:96621400-96623400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:96621600-96621800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr7:96621600-96621800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr7:96621600-96621800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:96621600-96621800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
18	chr7:96621600-96622000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr7:96621600-96622000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr7:96621600-96622000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:96621600-96622000	Bivalent Enhancer	Adipose Nuclei	Adipose
22	chr7:96621600-96622000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
23	chr7:96621600-96622000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
24	chr7:96621600-96622000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr7:96621600-96622200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr7:96621600-96622200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:96621600-96622200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
28	chr7:96621600-96622400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr7:96621600-96622400	Bivalent Enhancer	Liver	Liver
30	chr7:96621600-96622400	Bivalent Enhancer	Stomach Mucosa	stomach
31	chr7:96621600-96622600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:96621600-96622600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
33	chr7:96621600-96622600	Enhancers	Pancreas	Pancrea
34	chr7:96621600-96622800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr7:96621600-96622800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr7:96621600-96622800	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr7:96621600-96623000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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