Variant report

Variant	rs886817
Chromosome Location	chr11:17551641-17551642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17405241..17406227-chr11:17551569..17552408,2	MCF-7	breast:
2	chr11:17550003..17552043-chr11:17563166..17565257,2	K562	blood:
3	chr11:17099359..17101768-chr11:17550989..17553473,2	K562	blood:
4	chr11:17536439..17538354-chr11:17550411..17553263,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006611	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12270598	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12273896	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12275068	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16934376	0.85[JPT][hapmap]
rs2355021	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41282940	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756899	1.00[YRI][hapmap]
rs7112757	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72870321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72870323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72870330	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs733126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17516800-17553000	Weak transcription	Stomach Mucosa	stomach
2	chr11:17531800-17552400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:17538400-17562200	Weak transcription	Small Intestine	intestine
4	chr11:17540800-17552400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:17541000-17552600	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr11:17541400-17552400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:17541600-17555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:17545400-17553000	Weak transcription	Gastric	stomach
9	chr11:17547200-17563200	Genic enhancers	Fetal Intestine Small	intestine
10	chr11:17549000-17553400	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:17549400-17552600	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr11:17549600-17551800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:17549600-17553000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:17549600-17553800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:17549800-17552600	Weak transcription	Colonic Mucosa	Colon
16	chr11:17549800-17553400	Enhancers	Fetal Brain Male	brain
17	chr11:17550000-17552000	Enhancers	Brain Substantia Nigra	brain
18	chr11:17550000-17552400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:17550000-17553800	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr11:17550200-17551800	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:17550200-17552800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:17550400-17552600	Weak transcription	Spleen	Spleen
23	chr11:17550800-17552600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:17550800-17552600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:17551000-17551800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:17551000-17552600	Weak transcription	Right Atrium	heart
27	chr11:17551200-17552400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:17551200-17553000	Weak transcription	Fetal Heart	heart
29	chr11:17551400-17552400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:17551400-17552600	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:17551400-17552800	Enhancers	Brain Germinal Matrix	brain
32	chr11:17551400-17554800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:17551600-17551800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:17551600-17551800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:17551600-17552000	Weak transcription	Brain Anterior Caudate	brain
36	chr11:17551600-17552000	Enhancers	Brain Hippocampus Middle	brain
37	chr11:17551600-17552600	Weak transcription	Fetal Brain Female	brain
38	chr11:17551600-17553000	Weak transcription	Brain Angular Gyrus	brain
39	chr11:17551600-17556200	Genic enhancers	Fetal Intestine Large	intestine

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