Variant report

Variant	rs7112757
Chromosome Location	chr11:17562568-17562569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12270598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272861	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12273896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275068	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2355021	0.85[EUR][1000 genomes]
rs41282940	0.83[AMR][1000 genomes]
rs72870321	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72870323	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72870330	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs733126	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs878545	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs886817	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17547200-17563200	Genic enhancers	Fetal Intestine Small	intestine
2	chr11:17553800-17563200	Weak transcription	Colonic Mucosa	Colon
3	chr11:17558000-17563400	Weak transcription	Hela-S3	cervix
4	chr11:17558400-17563200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:17560400-17562600	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:17561800-17562800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:17561800-17563000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:17562000-17564000	Enhancers	Stomach Mucosa	stomach
9	chr11:17562000-17565200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:17562200-17564400	Weak transcription	Gastric	stomach
11	chr11:17562400-17562600	Enhancers	Small Intestine	intestine
12	chr11:17562400-17562800	Flanking Active TSS	Fetal Intestine Large	intestine
13	chr11:17562400-17564400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:17562400-17566200	Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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