Variant report

Variant	rs886852
Chromosome Location	chr7:112150716-112150717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62474613	0.96[ASN][1000 genomes]
rs62474615	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112148800-112150800	Enhancers	Fetal Muscle Trunk	muscle
2	chr7:112149000-112150800	Enhancers	Fetal Muscle Leg	muscle
3	chr7:112149000-112151200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:112149200-112150800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:112149400-112150800	Enhancers	HSMM	muscle
6	chr7:112149400-112151200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:112149400-112151200	Enhancers	NHLF	lung
8	chr7:112149600-112150800	Flanking Active TSS	Osteobl	bone
9	chr7:112149600-112151200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:112149800-112150800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:112149800-112151000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:112149800-112151200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:112149800-112151200	Enhancers	HMEC	breast
14	chr7:112150000-112150800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr7:112150000-112150800	Flanking Active TSS	GM12878-XiMat	blood
16	chr7:112150000-112150800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr7:112150000-112151000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:112150000-112151000	Enhancers	NHEK	skin
19	chr7:112150000-112151200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:112150200-112150800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:112150200-112150800	Flanking Active TSS	NH-A	brain
22	chr7:112150200-112150800	Flanking Active TSS	NHDF-Ad	bronchial
23	chr7:112150200-112151000	Enhancers	Aorta	Aorta
24	chr7:112150200-112151000	Enhancers	Fetal Heart	heart
25	chr7:112150200-112151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:112150200-112151200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:112150400-112150800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:112150400-112150800	Enhancers	Right Atrium	heart
29	chr7:112150400-112151200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr7:112150400-112152000	Enhancers	HSMMtube	muscle
31	chr7:112150600-112150800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
32	chr7:112150600-112150800	Enhancers	Left Ventricle	heart
33	chr7:112150600-112151000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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