Variant report

Variant	rs887015
Chromosome Location	chr7:39473569-39473570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10239767	0.87[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10239968	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10242113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249501	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10254703	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10258812	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10261831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267900	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10268273	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10269203	0.90[CEU][hapmap]
rs10269280	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs10271873	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10272392	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1155269	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11769625	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11970896	0.83[EUR][1000 genomes]
rs11972350	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11979059	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12112809	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12531581	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12536665	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769607	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs17769624	0.80[ASN][1000 genomes]
rs1860115	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs2073540	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2073541	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2073542	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2073543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2073544	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2073546	0.84[CEU][hapmap]
rs2108719	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2108720	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2159154	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2190888	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2190889	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2190890	0.82[CEU][hapmap]
rs2190891	0.86[CEU][hapmap];0.95[JPT][hapmap]
rs2215138	0.82[CEU][hapmap]
rs2237368	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2237369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237370	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237371	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237372	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237376	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237377	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237378	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237379	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237380	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237381	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237382	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2237383	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237385	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237389	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237390	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237391	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs2237395	0.82[CEU][hapmap]
rs2237403	0.84[JPT][hapmap];0.81[YRI][hapmap]
rs2282916	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2282917	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2282918	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2299121	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2299122	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299123	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2299126	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2299127	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299128	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299129	0.86[CEU][hapmap];0.95[JPT][hapmap]
rs2299130	0.91[JPT][hapmap]
rs2299131	0.80[ASN][1000 genomes]
rs2299132	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs2299133	0.84[CEU][hapmap]
rs2302122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302123	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2302125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28473216	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28625432	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28627325	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28651247	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2876836	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2876837	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2876838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2876839	0.86[EUR][1000 genomes]
rs34731084	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35650049	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3778933	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3819413	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3819414	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3819415	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3819417	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3819418	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3819419	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3819420	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs3819421	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs3819422	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs3819426	0.86[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs3823618	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4419726	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4535636	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4554374	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4629765	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56132347	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57998785	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs58810887	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59085311	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60003380	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60259745	0.83[EUR][1000 genomes]
rs61101006	0.83[EUR][1000 genomes]
rs6462917	0.87[CEU][hapmap];0.95[JPT][hapmap]
rs67717647	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6947429	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6947866	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6948191	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6948501	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6966246	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs740510	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs7459210	0.84[CEU][hapmap]
rs7797301	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7801100	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs887014	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39468400-39473800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:39471400-39474000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:39471800-39474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:39472000-39473600	Enhancers	Primary B cells from cord blood	blood
5	chr7:39472400-39473600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:39472400-39474000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:39472600-39474000	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:39472800-39473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:39473000-39473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:39473000-39498000	Weak transcription	Pancreas	Pancrea
11	chr7:39473200-39473600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr7:39473200-39473800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:39473200-39474200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:39473400-39473800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr7:39473400-39474000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:39473400-39474200	Enhancers	HUES64 Cell Line	embryonic stem cell

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