Variant report

Variant	rs889067
Chromosome Location	chr5:167456359-167456360
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10039736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11134483	1.00[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11134485	0.95[CHB][hapmap];0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs11955430	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12522181	0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1345735	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17069646	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1821254	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1862419	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2546944	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2546957	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2546960	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2569047	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2617963	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2617981	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55859018	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs730256	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs985650	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992047	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2035599	chr5:167456359-167456360	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
3	chr5:167450600-167457600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167450600-167466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
6	chr5:167454200-167456400	Weak transcription	Right Ventricle	heart
7	chr5:167454600-167457000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167454600-167463000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167454800-167456600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:167455200-167474600	Weak transcription	NHEK	skin
11	chr5:167456200-167457200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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