Variant report

Variant	rs8903
Chromosome Location	chr12:120878530-120878531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120875699..120878976-chr12:120901336..120905207,3	MCF-7	breast:
2	chr12:120877548..120880154-chr12:120905733..120907532,2	MCF-7	breast:
3	chr12:120875946..120878903-chr12:121123173..121125911,2	K562	blood:
4	chr12:120877503..120880070-chr12:120902368..120904130,3	K562	blood:

Variant related genes	Relation type
ENSG00000110917	Chromatin interaction
ENSG00000111786	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1037611	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774550	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774557	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10774558	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10774559	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849756	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849760	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849762	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849764	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065144	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065147	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065157	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065163	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065164	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1151845	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1151846	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1167688	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1167696	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167699	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167702	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167704	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1167705	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1167706	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1167713	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167714	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167715	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167716	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167719	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1167720	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167721	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167722	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1167723	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1167724	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1179460	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1179462	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1179463	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1179464	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1179465	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12227470	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12369178	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12370706	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1592361	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1671762	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1671765	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1671766	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1671769	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1710130	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1710132	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1710142	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1710143	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1710144	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1710146	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1794751	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1794752	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2076022	0.80[ASN][1000 genomes]
rs2235223	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2292680	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2301456	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2673623	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2673624	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2673625	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28390349	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3088345	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35801170	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3847971	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4767898	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526176	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs606443	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs667913	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs671566	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs680795	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7135855	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7307666	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs787818	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs787821	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs787822	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs787823	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs787826	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs787828	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs787830	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs787831	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs787833	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs787834	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7963890	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7972060	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs812560	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9669663	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs8903	GATC	cis	inferior olivary nucleus	BrainEAC
rs8903	GATC	cis	brain	BrainEAC
rs8903	POP5	Cis_1M	lymphoblastoid	RTeQTL
rs8903	GATC	cis	temporal cortex	BrainEAC
rs8903	RNF10	Cis_1M	lymphoblastoid	RTeQTL
rs8903	RNF10	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120876400-120883400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:120876600-120878600	Weak transcription	Ovary	ovary
3	chr12:120876800-120878600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:120876800-120881800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:120876800-120883400	Weak transcription	Esophagus	oesophagus
6	chr12:120877000-120878600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:120877000-120880400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:120877000-120880600	Weak transcription	Aorta	Aorta
9	chr12:120877000-120881200	Weak transcription	Psoas Muscle	Psoas
10	chr12:120877000-120883000	Weak transcription	Pancreas	Pancrea
11	chr12:120877000-120883200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:120877200-120878600	Weak transcription	Lung	lung
13	chr12:120877200-120881000	Weak transcription	Gastric	stomach
14	chr12:120877200-120882000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:120877200-120882000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:120877200-120883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:120877200-120883200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr12:120877400-120878800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:120877400-120880600	Weak transcription	Right Ventricle	heart
20	chr12:120877400-120882800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr12:120877600-120880400	Weak transcription	Fetal Kidney	kidney
22	chr12:120877600-120880600	Weak transcription	NHLF	lung
23	chr12:120877800-120878600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:120877800-120878800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr12:120877800-120879200	Strong transcription	HSMM	muscle
26	chr12:120877800-120879200	Strong transcription	HSMMtube	muscle
27	chr12:120877800-120882000	Strong transcription	Fetal Stomach	stomach
28	chr12:120877800-120882200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:120877800-120882600	Strong transcription	Left Ventricle	heart
30	chr12:120877800-120883400	Weak transcription	Stomach Mucosa	stomach
31	chr12:120878000-120878600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr12:120878000-120878600	Weak transcription	Thymus	Thymus
33	chr12:120878000-120878600	Weak transcription	Spleen	Spleen
34	chr12:120878000-120878800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:120878000-120878800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr12:120878000-120878800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:120878000-120878800	Genic enhancers	Hela-S3	cervix
38	chr12:120878000-120878800	Strong transcription	HepG2	liver
39	chr12:120878000-120879200	Strong transcription	Brain Germinal Matrix	brain
40	chr12:120878000-120879400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr12:120878000-120879400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr12:120878000-120879400	Strong transcription	Adipose Nuclei	Adipose
43	chr12:120878000-120879400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr12:120878000-120879400	Strong transcription	Fetal Lung	lung
45	chr12:120878000-120879400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr12:120878000-120879400	Strong transcription	Osteobl	bone
47	chr12:120878000-120879800	Strong transcription	NHDF-Ad	bronchial
48	chr12:120878000-120880200	Weak transcription	Colonic Mucosa	Colon
49	chr12:120878000-120881800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:120878000-120881800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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