Variant report

Variant	rs787828
Chromosome Location	chr12:120937086-120937087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:120936585-120937326	HCT-116	colon:	n/a	n/a
2	POLR2A	chr12:120936913-120937190	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr12:120936306-120937283	GM12878	blood:	n/a	n/a
4	POLR2A	chr12:120936608-120937406	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr12:120936472-120937334	U87	brain:	n/a	n/a
6	POLR2A	chr12:120934797-120937290	GM12878	blood:	n/a	n/a
7	POLR2A	chr12:120936554-120937195	H1-hESC	embryonic stem cell:	n/a	n/a
8	MTA3	chr12:120936716-120937215	GM12878	blood:	n/a	n/a
9	MTA3	chr12:120936503-120937330	GM12878	blood:	n/a	n/a
10	POLR2A	chr12:120936217-120937982	PANC-1	pancreas:	n/a	n/a
11	POLR2A	chr12:120936428-120937263	HepG2	liver:	n/a	n/a
12	POLR2A	chr12:120936842-120937176	HepG2	liver:	n/a	n/a
13	POLR2A	chr12:120936814-120937137	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr12:120936713-120937223	GM12891	blood:	n/a	n/a
15	POLR2A	chr12:120936715-120937231	HUVEC	blood vessel:	n/a	n/a
16	HEY1	chr12:120936312-120937309	HepG2	liver:	n/a	n/a
17	POLR2A	chr12:120936815-120937276	GM12891	blood:	n/a	n/a
18	BCLAF1	chr12:120936929-120937299	GM12878	blood:	n/a	n/a
19	POLR2A	chr12:120936509-120937305	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr12:120936564-120937315	MCF-7	breast:	n/a	n/a
21	POLR2A	chr12:120936498-120937300	HepG2	liver:	n/a	n/a
22	POLR2A	chr12:120936532-120937294	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr12:120936672-120937336	HUVEC	blood vessel:	n/a	n/a
24	POLR2A	chr12:120936227-120937836	K562	blood:	n/a	n/a
25	POLR2A	chr12:120936429-120937412	U87	brain:	n/a	n/a
26	CTCF	chr12:120937000-120937150	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr12:120936014-120937712	U87	brain:	n/a	n/a
28	POLR2A	chr12:120936773-120937158	GM12878	blood:	n/a	n/a
29	POLR2A	chr12:120936291-120937199	GM12878	blood:	n/a	n/a
30	POLR2A	chr12:120936890-120937210	K562	blood:	n/a	n/a
31	POLR2A	chr12:120936539-120937368	K562	blood:	n/a	n/a
32	POLR2A	chr12:120936639-120937249	HCT-116	colon:	n/a	n/a
33	POLR2A	chr12:120936138-120937411	HepG2	liver:	n/a	n/a
34	POLR2A	chr12:120936828-120937315	MCF10A-Er-Src	breast:	n/a	n/a
35	POLR2A	chr12:120933282-120938110	SK-N-MC	brain:	n/a	n/a
36	POLR2A	chr12:120936329-120937307	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr12:120936270-120937438	SK-N-SH	brain:	n/a	n/a
38	POLR2A	chr12:120936228-120937341	PFSK-1	brain:	n/a	n/a
39	POLR2A	chr12:120936841-120937266	GM12891	blood:	n/a	n/a
40	POLR2A	chr12:120936689-120937250	GM12892	blood:	n/a	n/a
41	POLR2A	chr12:120936978-120937115	HepG2	liver:	n/a	n/a
42	POLR2A	chr12:120936101-120938530	HepG2	liver:	n/a	n/a
43	POLR2A	chr12:120936674-120937376	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr12:120936525-120937332	PANC-1	pancreas:	n/a	n/a
45	POLR2A	chr12:120936300-120937313	GM12891	blood:	n/a	n/a
46	POLR2A	chr12:120936831-120937336	GM12892	blood:	n/a	n/a
47	POLR2A	chr12:120936137-120937375	U87	brain:	n/a	n/a
48	POLR2A	chr12:120936700-120937245	ProgFib	skin:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120932097..120935610-chr12:120935741..120938488,5	MCF-7	breast:
2	chr12:120936621..120939116-chr12:120939943..120941715,2	MCF-7	breast:
3	chr12:120905836..120910535-chr12:120931936..120937198,12	MCF-7	breast:
4	chr12:120881121..120885738-chr12:120933710..120938677,7	MCF-7	breast:
5	chr12:120936251..120938670-chr12:120977737..120980679,2	K562	blood:
6	chr12:120936942..120938466-chr12:120966216..120968071,2	MCF-7	breast:
7	chr12:120899786..120915162-chr12:120926090..120939394,54	MCF-7	breast:
8	chr12:120936822..120939481-chr12:120942042..120944124,2	K562	blood:
9	chr12:120895908..120898400-chr12:120936308..120939235,2	K562	blood:
10	chr12:120936907..120938548-chr12:120942568..120944463,2	MCF-7	breast:
11	chr12:120932725..120938580-chr12:120938743..120942478,11	MCF-7	breast:

No data

Variant related genes	Relation type
DYNLL1-AS1	TF binding region
ENSG00000248008	Chromatin interaction
ENSG00000110871	Chromatin interaction
ENSG00000170855	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000257218	Chromatin interaction
ENSG00000222601	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1037611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10774550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10774557	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10774558	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10774559	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849756	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10849762	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10849764	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065144	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11065147	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065157	0.82[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065158	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065163	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065164	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1151845	0.82[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1151846	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1167688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1167696	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167699	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167701	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167702	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167706	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167713	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167714	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167715	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167716	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167719	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1167720	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167721	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167722	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167723	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1167724	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1179460	0.87[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1179462	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1179463	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1179464	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1179465	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12227470	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12369178	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12370706	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12423303	1.00[YRI][hapmap]
rs1592361	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1671762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1671765	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1671766	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1671769	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16950058	1.00[YRI][hapmap]
rs16950065	1.00[YRI][hapmap]
rs1710130	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1710132	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710142	0.82[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1710143	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1710144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1710146	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1794751	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1794752	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2076022	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs2235223	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292680	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2301456	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2673623	0.83[ASN][1000 genomes]
rs2673624	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2673625	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28390349	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3088345	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35801170	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847971	0.82[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767898	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767899	0.82[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs496370	0.82[EUR][1000 genomes]
rs526176	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs542407	0.82[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs606443	1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs634688	0.82[EUR][1000 genomes]
rs637799	0.83[JPT][hapmap]
rs667913	0.82[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs671566	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs680795	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7135855	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7307666	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787818	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs787821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs787830	0.82[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs787831	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs787833	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs787834	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7963890	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7972060	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs812560	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8903	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9657936	1.00[YRI][hapmap]
rs9657941	1.00[YRI][hapmap]
rs9657942	1.00[YRI][hapmap]
rs9669663	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs787828	TAOK3	cis	parietal	SCAN
rs787828	ACADS	cis	parietal	SCAN
rs787828	GATC	cis	parietal	SCAN
rs787828	RNF10	cis	multi-tissue	Pritchard
rs787828	RNF10	cis	lymphoblastoid	seeQTL
rs787828	COQ5	cis	cerebellum	SCAN
rs787828	GATC	cis	cerebellum	SCAN
rs787828	P2RX4	cis	cerebellum	SCAN
rs787828	CCDC62	cis	parietal	SCAN
rs787828	KNTC1	cis	parietal	SCAN
rs787828	COQ5	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120935200-120937200	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
2	chr12:120935200-120938800	Weak transcription	Lung	lung
3	chr12:120935200-120941200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:120935200-120951400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:120935200-120966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:120935400-120937800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:120935400-120945800	Weak transcription	Pancreas	Pancrea
8	chr12:120935600-120937200	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:120935600-120941200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:120935600-120966200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:120935800-120937200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr12:120935800-120937200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:120935800-120937200	Genic enhancers	K562	blood
14	chr12:120935800-120937600	Weak transcription	Fetal Intestine Small	intestine
15	chr12:120935800-120938600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:120935800-120939000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:120935800-120939000	Weak transcription	Small Intestine	intestine
18	chr12:120935800-120940800	Weak transcription	Ovary	ovary
19	chr12:120935800-120941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:120935800-120941200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:120935800-120941200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr12:120935800-120941400	Weak transcription	Gastric	stomach
23	chr12:120935800-120947000	Weak transcription	Aorta	Aorta
24	chr12:120935800-120951800	Weak transcription	Esophagus	oesophagus
25	chr12:120935800-120953400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr12:120936000-120937200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr12:120936000-120937200	Strong transcription	Primary B cells from cord blood	blood
28	chr12:120936000-120937200	Enhancers	Brain Angular Gyrus	brain
29	chr12:120936000-120937200	Genic enhancers	Brain Hippocampus Middle	brain
30	chr12:120936000-120937200	Genic enhancers	Fetal Heart	heart
31	chr12:120936000-120937200	Strong transcription	Fetal Intestine Large	intestine
32	chr12:120936000-120937200	Genic enhancers	Right Ventricle	heart
33	chr12:120936000-120937400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:120936000-120938200	Strong transcription	Fetal Thymus	thymus
35	chr12:120936000-120938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:120936000-120939200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:120936000-120939600	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr12:120936000-120940400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr12:120936000-120941400	Weak transcription	Spleen	Spleen
40	chr12:120936000-120943200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr12:120936000-120943400	Strong transcription	Placenta	Placenta
42	chr12:120936000-120944200	Strong transcription	Left Ventricle	heart
43	chr12:120936000-120944800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:120936000-120947000	Weak transcription	Colonic Mucosa	Colon
45	chr12:120936000-120947200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr12:120936000-120955200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:120936000-120964200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr12:120936200-120937200	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr12:120936200-120937200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:120936200-120937200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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