Variant report

Variant	rs634688
Chromosome Location	chr12:121037441-121037442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121035601..121037513-chr12:121037577..121039226,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1037611	0.81[EUR][1000 genomes]
rs10774550	0.81[EUR][1000 genomes]
rs10774557	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10774558	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10774559	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10849756	0.80[EUR][1000 genomes]
rs10849760	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10849762	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10849764	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11065144	0.82[EUR][1000 genomes]
rs11065147	0.86[EUR][1000 genomes]
rs11065157	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11065158	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11065163	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11065164	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1167688	0.81[EUR][1000 genomes]
rs1167696	0.86[EUR][1000 genomes]
rs1167699	0.86[EUR][1000 genomes]
rs1167701	0.86[EUR][1000 genomes]
rs1167702	0.86[EUR][1000 genomes]
rs1167704	0.82[EUR][1000 genomes]
rs1167705	0.82[EUR][1000 genomes]
rs1167706	0.82[EUR][1000 genomes]
rs1167713	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1167714	0.86[EUR][1000 genomes]
rs1167715	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1167716	0.86[EUR][1000 genomes]
rs1167719	0.84[EUR][1000 genomes]
rs1167720	0.84[EUR][1000 genomes]
rs1167721	0.86[EUR][1000 genomes]
rs1167722	0.84[EUR][1000 genomes]
rs1167723	0.86[EUR][1000 genomes]
rs1167724	0.86[EUR][1000 genomes]
rs12227470	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12369178	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12370706	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1592361	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1671762	0.80[EUR][1000 genomes]
rs1671765	0.84[EUR][1000 genomes]
rs1671766	0.86[EUR][1000 genomes]
rs1671769	0.85[EUR][1000 genomes]
rs1710132	0.81[EUR][1000 genomes]
rs1710142	0.84[EUR][1000 genomes]
rs1710143	0.83[EUR][1000 genomes]
rs1710144	0.84[EUR][1000 genomes]
rs1710146	0.85[EUR][1000 genomes]
rs1794751	0.81[EUR][1000 genomes]
rs1794752	0.81[EUR][1000 genomes]
rs2292680	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2301456	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2673624	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2673625	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3088345	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs637799	0.97[ASN][1000 genomes]
rs671566	0.81[EUR][1000 genomes]
rs7135855	0.86[EUR][1000 genomes]
rs787818	0.81[EUR][1000 genomes]
rs787822	0.81[EUR][1000 genomes]
rs787823	0.81[EUR][1000 genomes]
rs787826	0.82[EUR][1000 genomes]
rs787828	0.82[EUR][1000 genomes]
rs787830	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs787831	0.85[EUR][1000 genomes]
rs787833	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs787834	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7963890	0.84[EUR][1000 genomes]
rs7972060	0.86[EUR][1000 genomes]
rs812560	0.82[EUR][1000 genomes]
rs9669663	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs634688	RNF10	Cis_1M	lymphoblastoid	RTeQTL
rs634688	POP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121035400-121038200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:121035800-121038400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:121036400-121038000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr12:121036400-121038000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr12:121036400-121041000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:121036600-121037600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:121036600-121038000	Enhancers	Fetal Kidney	kidney
8	chr12:121036600-121038000	Enhancers	Stomach Mucosa	stomach
9	chr12:121036600-121039000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:121036600-121039000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:121036600-121039400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:121036800-121038400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:121036800-121038800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr12:121036800-121039200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:121037000-121037800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:121037200-121037600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:121037200-121038000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:121037200-121038000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:121037200-121038800	Weak transcription	Placenta	Placenta
20	chr12:121037400-121037800	Weak transcription	Spleen	Spleen
21	chr12:121037400-121038200	Bivalent Enhancer	HepG2	liver
22	chr12:121037400-121038400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:121037400-121038600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:121037400-121038600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr12:121037400-121039800	Weak transcription	Hela-S3	cervix
26	chr12:121037400-121039800	Weak transcription	K562	blood
27	chr12:121037400-121040400	Weak transcription	A549	lung

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