Variant report

Variant	rs637799
Chromosome Location	chr12:121036748-121036749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr12:121036707-121037356	A549	lung:	n/a	chr12:121036971-121036978
2	JUN	chr12:121036735-121037504	K562	blood:	n/a	chr12:121036787-121036795 chr12:121036947-121036958

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121035601..121037513-chr12:121037577..121039226,2	MCF-7	breast:

Variant related genes	Relation type
RPL11P5	TF binding region

rs_ID	r²[population]
rs10774558	0.90[JPT][hapmap]
rs10774559	0.82[ASN][1000 genomes]
rs10849764	0.81[ASN][1000 genomes]
rs11065157	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs11065158	0.83[JPT][hapmap]
rs11065164	0.82[ASN][1000 genomes]
rs1151845	0.89[JPT][hapmap]
rs1167699	0.89[JPT][hapmap]
rs1167706	0.89[JPT][hapmap]
rs1167715	0.84[JPT][hapmap]
rs12369178	0.89[JPT][hapmap]
rs12370706	0.82[ASN][1000 genomes]
rs1592361	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1710142	0.89[JPT][hapmap]
rs1710146	0.89[JPT][hapmap]
rs2292680	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2301456	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2673623	0.80[EUR][1000 genomes]
rs2673624	0.84[ASN][1000 genomes]
rs2673625	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3088345	0.90[JPT][hapmap]
rs3847971	0.89[JPT][hapmap]
rs4767899	0.89[JPT][hapmap]
rs542407	0.89[JPT][hapmap]
rs606443	0.89[JPT][hapmap]
rs634688	0.97[ASN][1000 genomes]
rs667913	0.89[JPT][hapmap]
rs671566	0.89[JPT][hapmap]
rs787818	0.89[JPT][hapmap]
rs787828	0.83[JPT][hapmap]
rs787830	0.89[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs637799	RNF10	cis	multi-tissue	Pritchard
rs637799	RNF10	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121030200-121037200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:121035400-121038200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:121035800-121036800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:121035800-121038400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:121036400-121037400	Enhancers	Duodenum Mucosa	Duodenum
6	chr12:121036400-121038000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:121036400-121038000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:121036400-121041000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:121036600-121036800	Bivalent Enhancer	HepG2	liver
10	chr12:121036600-121037000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:121036600-121037000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:121036600-121037000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr12:121036600-121037200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr12:121036600-121037200	Enhancers	Left Ventricle	heart
15	chr12:121036600-121037200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr12:121036600-121037200	Bivalent Enhancer	NHDF-Ad	bronchial
17	chr12:121036600-121037400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:121036600-121037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr12:121036600-121037400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr12:121036600-121037400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr12:121036600-121037400	Enhancers	A549	lung
22	chr12:121036600-121037400	Flanking Active TSS	Hela-S3	cervix
23	chr12:121036600-121037400	Enhancers	K562	blood
24	chr12:121036600-121037600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:121036600-121038000	Enhancers	Fetal Kidney	kidney
26	chr12:121036600-121038000	Enhancers	Stomach Mucosa	stomach
27	chr12:121036600-121039000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:121036600-121039000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr12:121036600-121039400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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