Variant report

Variant	rs893815
Chromosome Location	chr15:74228164-74228165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74218715..74223482-chr15:74226725..74230359,5	K562	blood:
2	chr15:74226756..74229357-chr15:74247800..74251030,3	MCF-7	breast:
3	chr15:74227645..74229467-chr15:74238561..74240204,2	MCF-7	breast:
4	chr15:74226747..74228446-chr15:74257644..74259264,2	MCF-7	breast:
5	chr15:74227809..74230483-chr15:74244545..74246597,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12594472	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs1440101	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs1440102	0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1530168	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1550439	0.82[AFR][1000 genomes]
rs28603291	0.82[AFR][1000 genomes]
rs73446383	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74220800-74228400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:74221600-74228800	Weak transcription	Aorta	Aorta
3	chr15:74221800-74231800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:74222000-74231400	Weak transcription	Left Ventricle	heart
5	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
6	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:74222800-74228400	Weak transcription	Fetal Heart	heart
8	chr15:74223200-74228400	Weak transcription	Esophagus	oesophagus
9	chr15:74223400-74230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:74223800-74229800	Genic enhancers	Osteobl	bone
11	chr15:74224400-74231400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74224800-74230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:74225000-74228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:74225000-74229400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:74225200-74228400	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:74225200-74231400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:74225400-74229400	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:74225800-74228600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:74226000-74228400	Enhancers	Pancreas	Pancrea
20	chr15:74226200-74228400	Enhancers	Lung	lung
21	chr15:74226200-74228600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr15:74226400-74228400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr15:74226400-74229000	Genic enhancers	Muscle Satellite Cultured Cells	--
24	chr15:74226400-74229400	Enhancers	Stomach Mucosa	stomach
25	chr15:74226400-74230000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr15:74226600-74228400	Enhancers	Gastric	stomach
27	chr15:74226600-74228600	Enhancers	Right Atrium	heart
28	chr15:74226600-74229200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:74226600-74229600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:74226800-74229400	Enhancers	NHEK	skin
31	chr15:74226800-74229800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74227000-74228600	Enhancers	HSMM	muscle
33	chr15:74227000-74229200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:74227200-74228200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:74227200-74229200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:74227200-74229400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr15:74227200-74229600	Enhancers	Duodenum Mucosa	Duodenum
38	chr15:74227200-74230000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:74227200-74230000	Enhancers	Placenta	Placenta
40	chr15:74227200-74230000	Genic enhancers	Fetal Stomach	stomach
41	chr15:74227400-74229200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:74227400-74229200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr15:74227400-74229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:74227400-74229400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:74227400-74229400	Enhancers	Fetal Muscle Trunk	muscle
46	chr15:74227400-74229600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:74227400-74229600	Enhancers	Fetal Lung	lung
48	chr15:74227400-74229600	Enhancers	HMEC	breast
49	chr15:74227400-74230000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:74227600-74228400	Enhancers	NH-A	brain

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