Variant report

Variant	rs28603291
Chromosome Location	chr15:74226470-74226471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74224754..74226933-chr15:74339515..74341343,2	MCF-7	breast:
2	chr15:74222260..74224149-chr15:74225339..74227538,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12594324	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594472	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440101	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550439	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16958494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304721	0.98[ASN][1000 genomes]
rs41435250	0.85[ASN][1000 genomes]
rs58490364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73446383	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs893815	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74220800-74228000	Weak transcription	Fetal Kidney	kidney
2	chr15:74220800-74228400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:74221600-74228800	Weak transcription	Aorta	Aorta
4	chr15:74221800-74226800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:74221800-74227200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:74221800-74227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:74221800-74227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:74221800-74227800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74221800-74231800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:74222000-74231400	Weak transcription	Left Ventricle	heart
11	chr15:74222200-74226600	Weak transcription	Gastric	stomach
12	chr15:74222200-74226600	Weak transcription	Thymus	Thymus
13	chr15:74222400-74227200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:74222400-74228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
16	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:74222800-74227400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:74222800-74228400	Weak transcription	Fetal Heart	heart
19	chr15:74223000-74226600	Weak transcription	Right Atrium	heart
20	chr15:74223000-74227400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:74223200-74226600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:74223200-74226800	Weak transcription	NHEK	skin
23	chr15:74223200-74227200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:74223200-74227400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:74223200-74227400	Weak transcription	HMEC	breast
26	chr15:74223200-74227800	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:74223200-74228000	Weak transcription	Right Ventricle	heart
28	chr15:74223200-74228400	Weak transcription	Esophagus	oesophagus
29	chr15:74223400-74226600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:74223400-74227200	Weak transcription	Placenta	Placenta
31	chr15:74223400-74227400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:74223400-74228000	Weak transcription	Ovary	ovary
33	chr15:74223400-74230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:74223600-74227200	Strong transcription	Fetal Stomach	stomach
35	chr15:74223800-74229800	Genic enhancers	Osteobl	bone
36	chr15:74224000-74228000	Weak transcription	Adipose Nuclei	Adipose
37	chr15:74224200-74227000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:74224200-74227800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:74224400-74227000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr15:74224400-74231400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr15:74224600-74227200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:74224600-74227400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:74224800-74227800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:74224800-74230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:74225000-74226600	Strong transcription	HSMMtube	muscle
46	chr15:74225000-74228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:74225000-74229400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:74225200-74226800	Strong transcription	NHLF	lung
49	chr15:74225200-74227200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:74225200-74227400	Weak transcription	Fetal Lung	lung

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